Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00308 ATGAAGATTTTCACCTTCTTTCTCAAATGGGTTTCTGTTTTTCTTCTTCTTCTACTCTCTGTTTCTCCATCTTTTTCTGTAGTTCCTGAAGATGATATAAGGTGTCTTCGTGGTGTTAAGAATGCTCTTGTTGATCCTCTTGGAAGACTCAGTTCATGGGATTTCAAGAACACATCTGTTGGTCATCTCTGCAACAAATTCGTTGGTCTTTCCTGTTGGAATGACCGTGAGAATCGTATTCTCAGCCTTGAACTCAAAGATATGAAGCTCTCTGGTTCGATTTCTGAAGACTTACAGTACTGTGTAAGCTTGCAGAAACTGGATCTGTCCGGGAATAGCTTTTCCGGCGAGATCCCACCTCATATTTGTGAGTGGCTTCCGTATTTGGTTAGTATGGATTTGTCTAACAATCAATTTACTGGTTCTATTCCGGCTGATCTTGCCAGATGTTCTTATCTGAATTCGTTGATTTTGTCTGATAATGAACTTTCTGGTACAATACCAGTTGAGCTTACGAGTTTGGGTAGGCTTAACAAATTTTCTGTTGCTAATAATCAACTTACTGGGACGATTCCATCATTTTTTGATAAATTTGGAAAGGAGGATTTTGATGGGAATAGTGATTTATGTGGAGGGCCTGTTGGATCTAGTTGTGGTGGGTTGAGTAAGAAGAATCTTGCGATTATTATAGCTGCTGGTGTGTTTGGTGCTGCAGCTTCTCTGTTGTTAGGTTTTGGGTTATGGTGGTGGTATCATTCTAGAATGAATATGAAAAGGAGAAGGGGATATGGAGATGGGATTAGTGGGGATTGGGCTGATAGATTGAGAGCTTATAAGCTTGTTCAAGTTTCTTTGTTTCAGAAGCCTCTAGTGAAAGTTAAATTGGCTGATTTGATGGCTGCTACTAACAATTTCAATTCTGAAAACATTATAGTTTCTTCTAGAACTGGGACTACATATAGAGCTGTTCTTCCAGATGGTTCCGTACTTGCTATTAAGCGGCTCAATACTTGCAAGCTTGGTGAGAAGCTGTTTCGAATGGAGATGAATCGACTAGGATCGATAAGGCACCCAAATTTGACACCCCTTTTGGGGTTTTGTGTTGTGGAAGAGGAAAAGCTTTTGGTTTATAAGTATATGTCTAATGGGACTTTGTCTTCTTTGTTACATGGAAATGGTGAGATATTGGATTGGCCAACTAGGTTTAGGATTGGTCTGGGTGCAGCTAGAGGTCTTGCTTGGCTTCACCATGGATGCCAACCTCCATTTATGCATCAAAACATATGCTCTAGTGTAATTCTTGTGGATGAAGATTATGATGCTAGGATCATGGATTTTGGATTGGCAAGATTGATGGCTTCAGATTCTCAAGACAGCAGTTTTGTTAATGGAGATTTAGGGGAACTGGGCTACGTTGCTCCAGAATACCCGAGCACAATGGTTGCTTCTCTGAAAGGGGATGTTTATGGATTTGGAGTTGTGCTTTTGGAGTTGATCACTGGCCAGAAACCTCTAGAAGTCACCAAAGCAGAGGAAGGCTATAAGGGTAACTTGGTGGATTGGGTTAATCAGCAAAGTACGTCGGGTCGAATTAAGGATGTTATTGATAAAGATCTTTGTGGGAAAGGGAATGATGAAGAGATCTTACAATTTCTGAAAATTACAATGAATTGCATCGTTTCTCGGCCTAAAGACAGGTGGTCTATGTATCAAGTTTATCAGTCAATGAGAACCATGGCTAAAGACTACAGTTTCCCCGAACCAGATGATGAATTCCCACTTTTACTTGGCAAGGGAGATAATGATCCCATGTAG 1815 40.5 MKIFTFFLKWVSVFLLLLLSVSPSFSVVPEDDIRCLRGVKNALVDPLGRLSSWDFKNTSVGHLCNKFVGLSCWNDRENRILSLELKDMKLSGSISEDLQYCVSLQKLDLSGNSFSGEIPPHICEWLPYLVSMDLSNNQFTGSIPADLARCSYLNSLILSDNELSGTIPVELTSLGRLNKFSVANNQLTGTIPSFFDKFGKEDFDGNSDLCGGPVGSSCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYHSRMNMKRRRGYGDGISGDWADRLRAYKLVQVSLFQKPLVKVKLADLMAATNNFNSENIIVSSRTGTTYRAVLPDGSVLAIKRLNTCKLGEKLFRMEMNRLGSIRHPNLTPLLGFCVVEEEKLLVYKYMSNGTLSSLLHGNGEILDWPTRFRIGLGAARGLAWLHHGCQPPFMHQNICSSVILVDEDYDARIMDFGLARLMASDSQDSSFVNGDLGELGYVAPEYPSTMVASLKGDVYGFGVVLLELITGQKPLEVTKAEEGYKGNLVDWVNQQSTSGRIKDVIDKDLCGKGNDEEILQFLKITMNCIVSRPKDRWSMYQVYQSMRTMAKDYSFPEPDDEFPLLLGKGDNDPM 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2524432 2527312 - MELO3C021485.2.1 Cme09g00308 337168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00308 604 SUPERFAMILY Protein kinase-like (PK-like) 282 575 IPR011009 -
Cme09g00308 604 PANTHER RECEPTOR-LIKE PROTEIN 55 3 598 - -
Cme09g00308 604 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 598 - -
Cme09g00308 604 ProSiteProfiles Protein kinase domain profile. 305 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00308 604 Gene3D Transferase(Phosphotransferase) domain 1 380 590 - -
Cme09g00308 604 Gene3D Ribonuclease Inhibitor 30 220 IPR032675 -
Cme09g00308 604 SUPERFAMILY L domain-like 29 205 - -
Cme09g00308 604 Pfam Leucine Rich Repeat 103 123 IPR001611 GO:0005515
Cme09g00308 604 Pfam Leucine rich repeat N-terminal domain 30 73 IPR013210 -
Cme09g00308 604 Pfam Protein tyrosine and serine/threonine kinase 330 574 IPR001245 GO:0004672|GO:0006468
Cme09g00308 604 Gene3D Phosphorylase Kinase; domain 1 265 379 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01682 Cme-Chr1:23110862 Cme09g00308 Cme-Chr9:2524432 2.40E-177 dispersed
Cme08g00673 Cme-Chr8:4424306 Cme09g00308 Cme-Chr9:2524432 2.38E-31 dispersed
Cme09g00308 Cme-Chr9:2524432 Cme06g00980 Cme-Chr6:6983400 3.51E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65143 PF07714 PK_Tyr_Ser-Thr 1.10E-29 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00308 - - csv:101209638 1147.11