Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00333 ATGGAGTTTCAAGAAGGTTTGGTGAAGTTTATGTTTCATGGAGATGTTAAACCCAACTGGGTTTTTGGGAAGGATTCTCCATCTGTTGCTGTTTCGGAGATAAGTAGTACTCCTAGACGGAAATGGCGGATCTTCAATCGGTCTTCTTCTTCACCATTTCCATCAAAACCAAAAGCCCATTTTAAGGAAATACCTAAAGAATTGCTCTGTCCGATTACTGGGTCTTTAATGGCGGATCCTGTAATTGTTTCCTCTGGTCATACTTTTGAAGCTGCTTGTGTTCAGGTTTGTAAAGATTTAGGGTTGAAACCGACTTTGTTAGATGGTTCTAAGCCGGATTTCTCATCTGTGATTCCAAATCTGGCTCTTAAATCCACCATTTTCAATTGGTGTAAAAATTCCTCTTCTGAACCTCCTCAACCCCTTGATTTCTCCTCTGCTGAAAAGCTTGTTCGTAAATTCATCGCGGCTCATAGTAAAAGCGATGAGGAATTGATTCAAGGGGTTGCTGAGACTCCTGTGGTTCGATTCAACCATGCCGCCACTGAAGTTGCTCGACGAAGTTCTCATTTTCATTCGAGTTCCGATGAATCTGTAAGCGCCGTTGTTCCTACTCTGCCTCTTCCCCTTGCGATTCGCCCGAGTTGCTGTTCTTCGTCTTCTTCCTCTGATAACGAGATCATTGGTACTCTTAACTTGCCTGAAGAGGAAGAGATCGTCGTGAAGCTTAAAAGTTCTCAGGTTATTGAGGTTGAAGAGGCTGTGACGACGTTGAGAAAAATTACGAGAACTCGAGAGGACAGTAGAGTTCATCTCTGTTCTCCTATGATTCTCTCTGCTTTGCGATCTCTCATCGTCTCAAGGTACTCTGGCGTTCAAGTGAATTCAGTTGCGGCGCTTGTAAATCTATCTTTAGAGAATTCGAACAAGGTGAAGATCGTGCGGTCGGGCATTCTCCCTAATTTGATCGATGTTCTGAAAGGGGGTTCGCCGGAGGTTCAAGAACATGCTGCCGGCGCCATTTTCAGCTTAGCTCTCGACGACAACAACAAGACGGCGATCGGCGTGTTGGGTGCTCTACCACCATTGATACGGCTGTTGTTATCCGACTCGGAGCAAACTCGGCACGACTCAGCTCTTGCTCTTTACCACTTATCCCACGTTCAGAGCAACCGTTCGAAGCTAGTGAAATTCGGGTCGGTGCCGATTCTTCTCGGGATGGTGAAATCTCGTCACATGGCCGGCCGTATTTTGCTGATTTTGTGTAATTTAGCAGCTTGTTTTGAGGGCCGGGCCGCGTTGTTAGACTCCGGCGCGGTGGAGTGTTTGGTGGGGATGTTGAGAGAAAACGAGTTGGACTCTGAATCAACTCGGGAGAGTTGTGTGGCGGTTCTGTTTGGACTGAGTTTCGGCGGATTGAGGTTCAAAGGTCTCGCAAAAACCGCCGGAGCAATGGATCTTTTCATGGCAATGGAGAAAAATGGAAGTGAAAGATCAAAAGAGAAGGTGAAGAGGATGATGGAGTATATGAAAGCCAGAGATGAAGAAGCTGAGGATGTGAATTGGGAGGAATTGCTCGACTCGGGTTGTTTCGGTAGCCGAACTCGGTGTCGACTTGGTGCCGGAATGGACAGATCCACCGCAAACTCATCAGAATTCTGA 1662 46.57 MEFQEGLVKFMFHGDVKPNWVFGKDSPSVAVSEISSTPRRKWRIFNRSSSSPFPSKPKAHFKEIPKELLCPITGSLMADPVIVSSGHTFEAACVQVCKDLGLKPTLLDGSKPDFSSVIPNLALKSTIFNWCKNSSSEPPQPLDFSSAEKLVRKFIAAHSKSDEELIQGVAETPVVRFNHAATEVARRSSHFHSSSDESVSAVVPTLPLPLAIRPSCCSSSSSSDNEIIGTLNLPEEEEIVVKLKSSQVIEVEEAVTTLRKITRTREDSRVHLCSPMILSALRSLIVSRYSGVQVNSVAALVNLSLENSNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALDDNNKTAIGVLGALPPLIRLLLSDSEQTRHDSALALYHLSHVQSNRSKLVKFGSVPILLGMVKSRHMAGRILLILCNLAACFEGRAALLDSGAVECLVGMLRENELDSESTRESCVAVLFGLSFGGLRFKGLAKTAGAMDLFMAMEKNGSERSKEKVKRMMEYMKARDEEAEDVNWEELLDSGCFGSRTRCRLGAGMDRSTANSSEF 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2834562 2836223 + MELO3C033545.2.1 Cme09g00333 337193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00333 553 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 317 354 IPR000225 GO:0005515
Cme09g00333 553 Pfam U-box domain 64 134 IPR003613 GO:0004842|GO:0016567
Cme09g00333 553 ProSiteProfiles U-box domain profile. 63 137 IPR003613 GO:0004842|GO:0016567
Cme09g00333 553 SUPERFAMILY RING/U-box 56 138 - -
Cme09g00333 553 Pfam Armadillo/beta-catenin-like repeat 308 345 IPR000225 GO:0005515
Cme09g00333 553 Pfam Armadillo/beta-catenin-like repeat 348 386 IPR000225 GO:0005515
Cme09g00333 553 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 358 400 IPR000225 GO:0005515
Cme09g00333 553 PANTHER U BOX DOMAIN-CONTAINING 39 541 - -
Cme09g00333 553 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 39 541 - -
Cme09g00333 553 SMART Ubox_2 67 130 IPR003613 GO:0004842|GO:0016567
Cme09g00333 553 SUPERFAMILY ARM repeat 242 498 IPR016024 -
Cme09g00333 553 CDD RING-Ubox 69 101 - -
Cme09g00333 553 SMART arm_5 347 387 IPR000225 GO:0005515
Cme09g00333 553 SMART arm_5 306 346 IPR000225 GO:0005515
Cme09g00333 553 SMART arm_5 265 305 IPR000225 GO:0005515
Cme09g00333 553 SMART arm_5 427 470 IPR000225 GO:0005515
Cme09g00333 553 Gene3D - 234 509 IPR011989 -
Cme09g00333 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 136 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01939 Cme-Chr2:25729819 Cme09g00333 Cme-Chr9:2834562 3.07E-168 dispersed
Cme09g00333 Cme-Chr9:2834562 Cme11g01052 Cme-Chr11:15335584 1.13E-35 dispersed
Cme12g01719 Cme-Chr12:23969629 Cme09g00333 Cme-Chr9:2834562 6.21E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00333 - - csv:105434412 1006.51