Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00334 ATGGAGTTTCTCCTTCTTCTCATCCTCCTCATCCTCTCCGTCTTCTCTCATTCCTCCTCCTCTGCTCTCTCCCCCGACTACTACCGGAACTCCTGCCCTTCATTTTCTCAAATCATCCGCGACACCGTCACCAACAAACAAATCACCAACCCCACCACTGCCGCCGCCACCCTCCGTCTCTTCTTCCACGACTGTCTCCCCAACGGCTGCGATGCCTCCATCCTCATCTCCTCCACCCCCTTCAACGCCGCCGAGCGCAACGCCGACATCAACCTCTCTCTCCCCGGTGACGCCTTCGACGTTGTTGTCCGTGCTAAAACTGCCCTCGAACTTTCCTGCCCCAACACCGTCTCCTGCGCCGACATCCTCGCCGCTGCCACTCGCGACCTCCTCACCATGGTCGGCGGCCCTTACTACACTGTCTTCCTTGGCCGCAAAGACGCCAAGGTTTCCAAAGCCTCCGGTATCGAAGGTACGCTCCCTAAACCCACCATGTCCGTTTCTGAGATCATCAGAATCTTCGCCTCCAGAGGATTTTCCGTTCAGGAAATGGTGGCATTAAGCGGCGCTCATTCAATTGGGTTCTCGCATTGCAAGGAATTCACCACTGAGATCTTCAATTACAGCAACAGCCATTACAACCCAAGATTTGCATTAGGGTTACAGAGAGCTTGCGCGGATTACAAGAAGAATCCAACTCTCTCTGTTTTCAACGACGTAATGACGCCGAACAAATTCGATAACATGTATTTCAAGAATTTGCAAAAGGGTTTAGGGCTCTTGAAGTCCGATGGTGGATTGTATAGCGATCCAAGAACGAGACCATGGGTGGAGAAATATGCTACTGATGAGAGTGTGTTCTTCGCCGCGTTTTCTCAAGCGATGATGAAGCTTGGTGGCTATGGCGTCAAAGTGGGGAATGAAGGAGAAATCAGACGCAGGTGCGATGTATTTAACTGA 960 52.08 MEFLLLLILLILSVFSHSSSSALSPDYYRNSCPSFSQIIRDTVTNKQITNPTTAAATLRLFFHDCLPNGCDASILISSTPFNAAERNADINLSLPGDAFDVVVRAKTALELSCPNTVSCADILAAATRDLLTMVGGPYYTVFLGRKDAKVSKASGIEGTLPKPTMSVSEIIRIFASRGFSVQEMVALSGAHSIGFSHCKEFTTEIFNYSNSHYNPRFALGLQRACADYKKNPTLSVFNDVMTPNKFDNMYFKNLQKGLGLLKSDGGLYSDPRTRPWVEKYATDESVFFAAFSQAMMKLGGYGVKVGNEGEIRRRCDVFN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2836544 2837647 - MELO3C021513.2.1 Cme09g00334 337194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00334 319 SUPERFAMILY Heme-dependent peroxidases 23 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 Gene3D - 26 315 - -
Cme09g00334 319 PANTHER PEROXIDASE 31 4 319 - -
Cme09g00334 319 ProSiteProfiles Plant heme peroxidase family profile. 22 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 CDD secretory_peroxidase 25 318 IPR033905 GO:0004601|GO:0042744
Cme09g00334 319 Pfam Peroxidase 41 283 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 PANTHER - 4 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601
Cme09g00334 319 Gene3D Peroxidase, domain 2 162 299 - -
Cme09g00334 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Cme09g00334 319 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme09g00334 319 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01940 Cme-Chr2:25736686 Cme09g00334 Cme-Chr9:2836544 4.45E-127 dispersed
Cme09g00334 Cme-Chr9:2836544 Cme11g00354 Cme-Chr11:3632127 8.46E-99 dispersed
Cme03g01615 Cme-Chr3:25046897 Cme09g00334 Cme-Chr9:2836544 2.49E-20 transposed
Cme04g00339 Cme-Chr4:2709196 Cme09g00334 Cme-Chr9:2836544 8.69E-73 transposed
Cme11g01752 Cme-Chr11:25668775 Cme09g00334 Cme-Chr9:2836544 1.91E-14 transposed
Cme12g00272 Cme-Chr12:3151422 Cme09g00334 Cme-Chr9:2836544 2.59E-18 transposed
Cme12g01717 Cme-Chr12:23962345 Cme09g00334 Cme-Chr9:2836544 3.28E-135 wgd
Cme04g01925 Cme-Chr4:26977901 Cme09g00334 Cme-Chr9:2836544 1.26E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00334 K00430 - csv:105435603 585.874