Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00366 ATGATGTCGGACGGTTTGATTTTCAACCGGTCTCCAGGTCATGCCAACATGTTGTTTTTCGGAAGTAGTGATCCCATTCCTCGTGGACCAAGTTTCATGATGGGGATGGAGGAAACTTCAAAGAGGCGCTCATTTTTCAGCTCTCCGGATGACTTGTTTGACGATGATTACTACGATGATCAGCCACCTGAGAAGAAGCGCCGGCTGACTCAAGAGCAGGTGCATCTGCTGGAGATTAGCTTTGAGTCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAACCGCCGAGCTAGATGGAAGACAAAGCAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCTTTTCGTTCTAGCTACGACTTTATTGCGAAGGAGAATGAAAGGCTCAAAGCCGAGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCATCGTTTCACGCTAAGAATCCCGATCCGTTTCTGGAGGATCAACTCCTTGTTCCTGTTGTCCAACAGAACATTAAGATTGAAGACCACCATAGTTGCAGGAGCAATGGAAGCGCTGTGCTGGATGAGGACGGTCCTCAACTCCTAGACAGTGGGGATTCGTACATCCTGAGCAATGACTATGATGGCTGTGTTTTGCCAGCTTTTGGTGTGAACTCGGAGGAGGAAGATGGGAGTGATGACGGTCAGGGTTACTTCTCGGATGTTTATACAACAGTCGATCAGCAGACGCACGAGGGAGAGCCTCTGACCTGGTGGGACTGGACATCGTAA 837 47.91 MMSDGLIFNRSPGHANMLFFGSSDPIPRGPSFMMGMEETSKRRSFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFESENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFIAKENERLKAEVASLTEKLQAKEVVESSFHAKNPDPFLEDQLLVPVVQQNIKIEDHHSCRSNGSAVLDEDGPQLLDSGDSYILSNDYDGCVLPAFGVNSEEEDGSDDGQGYFSDVYTTVDQQTHEGEPLTWWDWTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3134032 3136696 - MELO3C021534.2.1 Cme09g00366 337226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00366 278 Gene3D - 58 126 - -
Cme09g00366 278 SUPERFAMILY Homeodomain-like 48 122 IPR009057 -
Cme09g00366 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 261 IPR045224 GO:0003700
Cme09g00366 278 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Cme09g00366 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 261 - -
Cme09g00366 278 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Cme09g00366 278 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Cme09g00366 278 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Cme09g00366 278 MobiDBLite consensus disorder prediction 45 66 - -
Cme09g00366 278 Coils Coil 140 167 - -
Cme09g00366 278 CDD homeodomain 65 121 IPR001356 GO:0003677
Cme09g00366 278 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Cme09g00366 278 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355|GO:0043565
Cme09g00366 278 SMART HOX_1 63 124 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g01900 Cme09g00366 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00288 Cme-Chr9:2286250 Cme09g00366 Cme-Chr9:3134032 3.99E-35 dispersed
Cme09g00366 Cme-Chr9:3134032 Cme12g01748 Cme-Chr12:24189271 2.81E-43 dispersed
Cme04g01900 Cme-Chr4:26702265 Cme09g00366 Cme-Chr9:3134032 2.60E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41919 PF00046 Homeodomain 3.40E-17 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00366 K09338 - csv:101210106 520.776