Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme09g00376 | ATGGATCATCCATATTCTGAAACTTTAAGGCACAAATGTGAAGGTTGCTTCAAGCAATTCAACAAAATAGAGCACTTAGTAGAGCATATGAGAATCTCATTTCACTCAGTTCATGAACCAATTTGCTCCTTTTGCCACAAACACTTCAGATACTTTGATTCTCTTAGAGAACATCTTATTGGGCCATTGCCAAAGCAAGAATGCAACAACATATTCAATGCAAGAGGATGCAAAATCTGCTTAGCCATCTTTGAGAGTCCACTCAAGCTCAACCTTCACCAAGAAAGATGTCAACTTAGGCCTATGAATTCCAGTCAAAGTAGGAGGCGTTTAGAGAAGATGGAAAATGGTGAGACAAAAGGCAACGAAGCAGTGGCATTGAGTTGCACCATGGTGGGCGCTGGCAGGGACGGCTCGCTAAATATTTGCGTTAGGATTTGCCTTGTTGACCAAAACGAGTCGCTCATCTTTTCTACTTATGTCAACCCATCCCTTCCCATCACAAACTAT | 510 | 41.76 | MDHPYSETLRHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRRRLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNY | 170 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3377034 | 3378621 | - | MELO3C027322.2.1 | Cme09g00376 | 337236 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme09g00376 | 170 | SUPERFAMILY | beta-beta-alpha zinc fingers | 11 | 59 | IPR036236 | - | |
Cme09g00376 | 170 | PANTHER | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED | 5 | 170 | - | - | |
Cme09g00376 | 170 | Pfam | Zinc finger, C2H2 type | 11 | 35 | IPR013087 | - | |
Cme09g00376 | 170 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 11 | 40 | IPR013087 | - | |
Cme09g00376 | 170 | PANTHER | OS02G0709000 PROTEIN | 5 | 170 | - | - | |
Cme09g00376 | 170 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 13 | 35 | IPR013087 | - | |
Cme09g00376 | 170 | Gene3D | Classic Zinc Finger | 2 | 61 | - | - | |
Cme09g00376 | 170 | Pfam | C2H2-type zinc finger | 41 | 59 | - | - | |
Cme09g00376 | 170 | Gene3D | - | 120 | 170 | IPR036397 | GO:0003676 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme09g00376 | Cme-Chr9:3377034 | Cme11g00822 | Cme-Chr11:10690323 | 2.22E-40 | dispersed | |
Cme09g00376 | Cme-Chr9:3377034 | Cme09g00379 | Cme-Chr9:3399852 | 2.55E-55 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41920 | PF00096 | zf-C2H2 | 0.0092 | CL0361 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme09g00376 | - | - | cmo:103503241 | 362.073 |