Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00376 ATGGATCATCCATATTCTGAAACTTTAAGGCACAAATGTGAAGGTTGCTTCAAGCAATTCAACAAAATAGAGCACTTAGTAGAGCATATGAGAATCTCATTTCACTCAGTTCATGAACCAATTTGCTCCTTTTGCCACAAACACTTCAGATACTTTGATTCTCTTAGAGAACATCTTATTGGGCCATTGCCAAAGCAAGAATGCAACAACATATTCAATGCAAGAGGATGCAAAATCTGCTTAGCCATCTTTGAGAGTCCACTCAAGCTCAACCTTCACCAAGAAAGATGTCAACTTAGGCCTATGAATTCCAGTCAAAGTAGGAGGCGTTTAGAGAAGATGGAAAATGGTGAGACAAAAGGCAACGAAGCAGTGGCATTGAGTTGCACCATGGTGGGCGCTGGCAGGGACGGCTCGCTAAATATTTGCGTTAGGATTTGCCTTGTTGACCAAAACGAGTCGCTCATCTTTTCTACTTATGTCAACCCATCCCTTCCCATCACAAACTAT 510 41.76 MDHPYSETLRHKCEGCFKQFNKIEHLVEHMRISFHSVHEPICSFCHKHFRYFDSLREHLIGPLPKQECNNIFNARGCKICLAIFESPLKLNLHQERCQLRPMNSSQSRRRLEKMENGETKGNEAVALSCTMVGAGRDGSLNICVRICLVDQNESLIFSTYVNPSLPITNY 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3377034 3378621 - MELO3C027322.2.1 Cme09g00376 337236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00376 170 SUPERFAMILY beta-beta-alpha zinc fingers 11 59 IPR036236 -
Cme09g00376 170 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 5 170 - -
Cme09g00376 170 Pfam Zinc finger, C2H2 type 11 35 IPR013087 -
Cme09g00376 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 40 IPR013087 -
Cme09g00376 170 PANTHER OS02G0709000 PROTEIN 5 170 - -
Cme09g00376 170 ProSitePatterns Zinc finger C2H2 type domain signature. 13 35 IPR013087 -
Cme09g00376 170 Gene3D Classic Zinc Finger 2 61 - -
Cme09g00376 170 Pfam C2H2-type zinc finger 41 59 - -
Cme09g00376 170 Gene3D - 120 170 IPR036397 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00376 Cme-Chr9:3377034 Cme11g00822 Cme-Chr11:10690323 2.22E-40 dispersed
Cme09g00376 Cme-Chr9:3377034 Cme09g00379 Cme-Chr9:3399852 2.55E-55 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41920 PF00096 zf-C2H2 0.0092 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00376 - - cmo:103503241 362.073