Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme09g00379 | ATGAGGACTTCTTTTCACTCACATCATGAACCAACTTGTGCCATTTGCAAGAAACATTGTCGATCTCTTGATTCTCTTAGAGAACATCTCATTGGGCCACTGCCAAAACAAGAATGCAGAAACATCTTTGCTACAAGAGGATGCAAGTTTTGCTTGGCCATCCTTGACAGTTCTTACTCACAAAGACTCCACCAAGAAAGATGCCAATTCTCTCCAGTTAATTCTGGACTTCTTGCTCGTTTCGCCAACTTGGGAATTCGTGATGGTTCAACCATCATCGACAGCGGGAGAACTCGAGGCTCAGGGGCCATCGCGCTAGCTTGCAAATATGTAGGTGGAGGAAGTGATGGGTCGCTGGACATATGTGCTAAGGTTTGCCTTGTTGATGAGGGTGAAAATGTCATCTTCTATAGCTATGTCAAGCCTATAATTCCTGTTACAAATTATAGGTATGAAACAACTGGAATTCGTCCAGAACATATTCGAGATGCAATGCCAATGAAACAAGTTCAAAAGAAAATTCAAGAAATCCTCTACAATGGAGGTGAGAAGGCTAGGATTCTTGTGGGTCATTGCGTCGAAGACGATCTCAAACGCCTACAAATTGGTTACCCATCCGTCATGATAAGGGACACAGCAAACTATCCACCATTGATGAAGTCAAGCAAGCTTTGCAATTCTCTCAAGTATCTAGCTCAAGTGTATCTAGGATTTGATCTTCAAAATGGTATACAAGATCCTTATGAAGAATGTATTGTTGCTATGAGATTATACAAGAGAATGAGATCACAAGTTCATAGGAGGAAAGAGAGCTATCCAATGGCTTCTGACCCACAAAACAAAAATAATTTTGCTATTTGGAGGGAAAATGAGCTTCAAAGGATGAGTCCAGAACAAATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGATTTGAGGACTTGA | 954 | 40.99 | MRTSFHSHHEPTCAICKKHCRSLDSLREHLIGPLPKQECRNIFATRGCKFCLAILDSSYSQRLHQERCQFSPVNSGLLARFANLGIRDGSTIIDSGRTRGSGAIALACKYVGGGSDGSLDICAKVCLVDEGENVIFYSYVKPIIPVTNYRYETTGIRPEHIRDAMPMKQVQKKIQEILYNGGEKARILVGHCVEDDLKRLQIGYPSVMIRDTANYPPLMKSSKLCNSLKYLAQVYLGFDLQNGIQDPYEECIVAMRLYKRMRSQVHRRKESYPMASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMDLRT | 317 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 3399852 | 3403343 | - | MELO3C021540.2.1 | Cme09g00379 | 337239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme09g00379 | 317 | SUPERFAMILY | Ribonuclease H-like | 117 | 264 | IPR012337 | - | |
| Cme09g00379 | 317 | SMART | exoiiiendus | 102 | 267 | IPR013520 | - | |
| Cme09g00379 | 317 | CDD | REX4_like | 104 | 259 | IPR037431 | GO:0006364|GO:0008408 | |
| Cme09g00379 | 317 | Gene3D | - | 100 | 280 | IPR036397 | GO:0003676 | |
| Cme09g00379 | 317 | PANTHER | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED | 1 | 314 | - | - | |
| Cme09g00379 | 317 | PANTHER | OS02G0709000 PROTEIN | 1 | 314 | - | - | |
| Cme09g00379 | 317 | Pfam | Exonuclease | 119 | 236 | IPR013520 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme07g00559 | Cme-Chr7:4693259 | Cme09g00379 | Cme-Chr9:3399852 | 1.17E-25 | dispersed | |
| Cme09g00379 | Cme-Chr9:3399852 | Cme11g00822 | Cme-Chr11:10690323 | 4.83E-94 | dispersed | |
| Cme09g00376 | Cme-Chr9:3377034 | Cme09g00379 | Cme-Chr9:3399852 | 2.55E-55 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme09g00379 | - | - | csv:101218614 | 632.484 |