Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00387 ATGGAGAATCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGAGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCTTTCACTGCTGGTCACCACCTTTGGGTTGTGATGCCATACATGTCAGGGGGATCTTGCCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTTAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCTGATTTTGGAGTCTCAGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACGTTTGTTGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACACGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCACTTGAATTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTAATGACACTACAAAATGCTCCGCCTGGTCTTGACTATGAAAGAGATAAGAGATTTTCTAAGTCGTTCAAAGAAATGGTTGCTACATGCTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCTGAGAAGCTCCTAAAGCACCCTTTTTTTAAACATGCTCGTTCAGTTGATTACCTTGCTCGAACGATCCTGGATGGCCTTGATCCATTAGGGGATCGCTTTAAGAAGCTGAAGGCAAAAGAGGCTGATCTTCTGGGACAAAACAAGGCTTTGTATGGAGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCAAACATAGAAGATCTAGATGTACATACTACACAACAAAGAAACAAGAATAATGAATTTACCTTTCCGGTAGAGGGTTCATCACTTGAAAGGCTGAGTCACCCCACTGCTGCAGCTAGTCAGGAGGATGGTTTCAATGATCTTCATGATCTGGAGAGTTCCCTTGCTTCTTTCCCTATGAAACCTCTTGAAGCACTGAAAGATTGTTTTGACATCTATGAAGATATAAGCACGGACAGTGTAAGGCCAGTGGATAGAGAAAATGGAAGAACTGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTATATGTCAGAGAATAAGAGATCTTTCAGCGGTTCACTAATTTCTGATAATTCTGTATCTCCTAAAAAGGTTACTGTAGATGGTGATAGGGACTATTTGCAGTCGAAACTTCCATCTGAGCGCAATTACAGTGGTCCACTATTATATCGCCAGAAGAGGGATACAAATAATGTTTCATCTGTTGAAGATGCATCGGATGGAACAGTTGTTCAGCGCAAGGGGCGGTTTAAAGTTACTTCAGCAGAGCTTAGTCCAAAGGGTCCTATGACGGGCTCATTTAGCCCAGTCTGTGGAGGGACAATAAGTCCAACATCCCTGAACCTCACACCTGCTCTACTCCTCCCATCAATGCAGTGCATTTTGCAGCAGAACATCGTTCAACGGGAAGAAATTCTTAAATTGATCAAGTGTTTGGAACAAATGACTGATGCATCAGAGACGGTCACCAATGACTTTCTGCAGGTACCACCAACTTCCTTGAGGGAAAGAGAGTTGCAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATCATCTCGTTGAGGAATTAGAGAAGCAAAAATTGAAAAATGCCGAGTTTGAAAGACACGTGATTTCTATGGCAAATAAAGAGAAAACATAA 2004 42.02 MENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGDRFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTQQRNKNNEFTFPVEGSSLERLSHPTAAASQEDGFNDLHDLESSLASFPMKPLEALKDCFDIYEDISTDSVRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNSVSPKKVTVDGDRDYLQSKLPSERNYSGPLLYRQKRDTNNVSSVEDASDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNIVQREEILKLIKCLEQMTDASETVTNDFLQVPPTSLRERELQSQVVHLQQRIDHLVEELEKQKLKNAEFERHVISMANKEKT 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3475453 3488070 + MELO3C021549.2.1 Cme09g00387 337247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00387 667 Gene3D Transferase(Phosphotransferase) domain 1 97 309 - -
Cme09g00387 667 MobiDBLite consensus disorder prediction 437 500 - -
Cme09g00387 667 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00387 667 MobiDBLite consensus disorder prediction 449 483 - -
Cme09g00387 667 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Cme09g00387 667 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00387 667 Coils Coil 623 657 - -
Cme09g00387 667 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 665 - -
Cme09g00387 667 CDD STKc_OSR1_SPAK 14 277 - -
Cme09g00387 667 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00387 667 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cme09g00387 667 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 665 - -
Cme09g00387 667 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01751 Cme-Chr4:25101881 Cme09g00387 Cme-Chr9:3475453 0 dispersed
Cme05g00538 Cme-Chr5:5213001 Cme09g00387 Cme-Chr9:3475453 9.35E-49 dispersed
Cme06g02394 Cme-Chr6:31100278 Cme09g00387 Cme-Chr9:3475453 0 dispersed
Cme07g00580 Cme-Chr7:4976665 Cme09g00387 Cme-Chr9:3475453 4.75E-71 dispersed
Cme09g00387 Cme-Chr9:3475453 Cme08g01088 Cme-Chr8:7195247 4.78E-41 dispersed
Cme09g00387 Cme-Chr9:3475453 Cme06g00521 Cme-Chr6:3294460 7.70E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65145 PF00069 Pkinase 2.70E-60 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00387 K08835 - csv:101205102 1328.54