Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00387 ATGGAGAATCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGAGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCTTTCACTGCTGGTCACCACCTTTGGGTTGTGATGCCATACATGTCAGGGGGATCTTGCCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTTAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCTGATTTTGGAGTCTCAGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACGTTTGTTGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACACGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCACTTGAATTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTAATGACACTACAAAATGCTCCGCCTGGTCTTGACTATGAAAGAGATAAGAGATTTTCTAAGTCGTTCAAAGAAATGGTTGCTACATGCTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCTGAGAAGCTCCTAAAGCACCCTTTTTTTAAACATGCTCGTTCAGTTGATTACCTTGCTCGAACGATCCTGGATGGCCTTGATCCATTAGGGGATCGCTTTAAGAAGCTGAAGGCAAAAGAGGCTGATCTTCTGGGACAAAACAAGGCTTTGTATGGAGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCAAACATAGAAGATCTAGATGTACATACTACACAACAAAGAAACAAGAATAATGAATTTACCTTTCCGGTAGAGGGTTCATCACTTGAAAGGCTGAGTCACCCCACTGCTGCAGCTAGTCAGGAGGATGGTTTCAATGATCTTCATGATCTGGAGAGTTCCCTTGCTTCTTTCCCTATGAAACCTCTTGAAGCACTGAAAGATTGTTTTGACATCTATGAAGATATAAGCACGGACAGTGTAAGGCCAGTGGATAGAGAAAATGGAAGAACTGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTATATGTCAGAGAATAAGAGATCTTTCAGCGGTTCACTAATTTCTGATAATTCTGTATCTCCTAAAAAGGTTACTGTAGATGGTGATAGGGACTATTTGCAGTCGAAACTTCCATCTGAGCGCAATTACAGTGGTCCACTATTATATCGCCAGAAGAGGGATACAAATAATGTTTCATCTGTTGAAGATGCATCGGATGGAACAGTTGTTCAGCGCAAGGGGCGGTTTAAAGTTACTTCAGCAGAGCTTAGTCCAAAGGGTCCTATGACGGGCTCATTTAGCCCAGTCTGTGGAGGGACAATAAGTCCAACATCCCTGAACCTCACACCTGCTCTACTCCTCCCATCAATGCAGTGCATTTTGCAGCAGAACATCGTTCAACGGGAAGAAATTCTTAAATTGATCAAGTGTTTGGAACAAATGACTGATGCATCAGAGACGGTCACCAATGACTTTCTGCAGGTACCACCAACTTCCTTGAGGGAAAGAGAGTTGCAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATCATCTCGTTGAGGAATTAGAGAAGCAAAAATTGAAAAATGCCGAGTTTGAAAGACACGTGATTTCTATGGCAAATAAAGAGAAAACATAA 2004 42.02 MENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGDRFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTQQRNKNNEFTFPVEGSSLERLSHPTAAASQEDGFNDLHDLESSLASFPMKPLEALKDCFDIYEDISTDSVRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNSVSPKKVTVDGDRDYLQSKLPSERNYSGPLLYRQKRDTNNVSSVEDASDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNIVQREEILKLIKCLEQMTDASETVTNDFLQVPPTSLRERELQSQVVHLQQRIDHLVEELEKQKLKNAEFERHVISMANKEKT 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3475453 3488070 + MELO3C021549.2.1 Cme09g00387 337247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00387 667 Gene3D Transferase(Phosphotransferase) domain 1 97 309 - -
Cme09g00387 667 MobiDBLite consensus disorder prediction 437 500 - -
Cme09g00387 667 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00387 667 MobiDBLite consensus disorder prediction 449 483 - -
Cme09g00387 667 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Cme09g00387 667 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00387 667 Coils Coil 623 657 - -
Cme09g00387 667 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 665 - -
Cme09g00387 667 CDD STKc_OSR1_SPAK 14 277 - -
Cme09g00387 667 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00387 667 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cme09g00387 667 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 665 - -
Cme09g00387 667 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00387 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101205102 1328.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01751 Cme-Chr4:25101881 Cme09g00387 Cme-Chr9:3475453 0 dispersed
Cme05g00538 Cme-Chr5:5213001 Cme09g00387 Cme-Chr9:3475453 9.35E-49 dispersed
Cme06g02394 Cme-Chr6:31100278 Cme09g00387 Cme-Chr9:3475453 0 dispersed
Cme07g00580 Cme-Chr7:4976665 Cme09g00387 Cme-Chr9:3475453 4.75E-71 dispersed
Cme09g00387 Cme-Chr9:3475453 Cme08g01088 Cme-Chr8:7195247 4.78E-41 dispersed
Cme09g00387 Cme-Chr9:3475453 Cme06g00521 Cme-Chr6:3294460 7.70E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1350 . . Bda01g01279 Bda13g01619 Bpe02g01494 Bpe14g00247 . . . . . . . . Sed02g1388 . Cpe13g00900 Bhi06g00518 Tan11g0629 Cmetu09g0153 . . . . . . . . . . . Cone11ag0114 Cone18ag1363 . . Lsi02g01568 Csa05g01916 . . Blo17g00301 Blo18g00333 . . . . Bma01g00975 . . Cmo04g02836 Cmo15g00350 Cma04g02707 Cma15g00341 Car04g02610 Car15g00325 . Cpe01g02349 . . . . . . . Cla09g01858 Cam09g1954 Cec09g2018 Cco09g2111 . . . . . Chy09g00338 Cme09g00387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g00580 . 1 693 MAP Kinase Kinase Kinase Kinase AT1G53165 63.1 1.2e-223 773.1
Cme07g00580 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 64.9 4.6e-231 797.7
Cme07g00580 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 2.9e-67 253.8
Cme09g00387 . 1 664 MAP Kinase Kinase Kinase Kinase AT5G14720 66.3 4.6e-252 867.5
Cme04g01751 . 3 551 MAP Kinase Kinase Kinase Kinase AT5G14720 51.4 1.1e-149 527.3
Cme06g00521 CCT 32 384 MAP Kinase Kinase Kinase Kinase AT5G14720 51.1 5.5e-96 349.0
Cme06g02394 . 7 719 MAP Kinase Kinase Kinase Kinase AT4G24100 64.8 1.7e-247 852.4
Cme04g01751 . 2 348 MAP Kinase Kinase Kinase Kinase AT4G24100 62.2 4.1e-129 459.1
Cme06g02394 . 11 720 MAP Kinase Kinase Kinase Kinase AT4G10730 65.3 5.4e-248 854.0
Cme04g01751 . 4 362 MAP Kinase Kinase Kinase Kinase AT1G70430 61.8 3.6e-131 465.7
Cme06g02394 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.3 2.4e-119 426.4
Cme04g01751 . 1 570 MAP Kinase Kinase Kinase Kinase AT1G79640 65.0 2.0e-199 692.6
Cme09g00387 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.9 5.7e-103 371.7
Cme04g01751 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 9.8e-87 317.8
Cme06g02394 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.5 1.3e-75 280.8
Cme06g00521 CCT 32 495 MAP Kinase Kinase Kinase Kinase AT4G14480 58.0 3.7e-142 501.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65145 PF00069 Pkinase 2.70E-60 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g00387 Cme_Chr09 FPKM 7.447813 7.967099 0.963515 1.559355 1.353175 1.718279 1.649083 0.272192 0.0 0.258094