Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00420 ATGGCTTCTTCAAGCTATACAAACTCACCATGTGCAGCATGCAAATTCCTAAGAAGAAAATGCTTAGCTGATTGCATATTTGCACCCTATTTTCCCCCTGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTTCTCAATGAGGTTCAACCCCATCAGCGCGAGGATGCCGTAAATTCTCTAGCTTATGAGGCCGAGGCTCGTATGAAAGACCCTGTCTACGGCTGCGTTGGGGCCATCTCCGTTTTGCAACGACAAGTTATTCGTCTCCAAAAAGAGCTTGACGCTACGAATGCTGATTTGGTACGATATGCAAGCGGTAGCGCCCGCCCGCCCTCACAATATGGAAGGAGAGCAACAACTGCCTCGGTGAGTAGTACTCGCCATCATTCTGGTCTGTCTTTTCTTTCTCCCTTGAGCAGTAATCATCACGATGATCCTTATTGCCATGAAAATGAGGAAGGCAATTGA 498 47.19 MASSSYTNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYASGSARPPSQYGRRATTASVSSTRHHSGLSFLSPLSSNHHDDPYCHENEEGN 165
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 3984698 3985376 - MELO3C021578.2.1 Cme09g00420 337280
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00420 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 132 - -
Cme09g00420 165 Coils Coil 89 109 - -
Cme09g00420 165 MobiDBLite consensus disorder prediction 122 150 - -
Cme09g00420 165 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cme09g00420 165 MobiDBLite consensus disorder prediction 114 165 - -
Cme09g00420 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 132 - -
Cme09g00420 165 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cme04g01850 Cme09g00420 CCT
Cme04g01850 Cme09g00420 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00267 Cme-Chr3:3441789 Cme09g00420 Cme-Chr9:3984698 2.56E-49 dispersed
Cme09g00420 Cme-Chr9:3984698 Cme11g01727 Cme-Chr11:25352249 2.94E-47 dispersed
Cme03g01034 Cme-Chr3:19570987 Cme09g00420 Cme-Chr9:3984698 9.24E-43 transposed
Cme03g02160 Cme-Chr3:28717470 Cme09g00420 Cme-Chr9:3984698 1.13E-20 transposed
Cme10g01224 Cme-Chr10:12573051 Cme09g00420 Cme-Chr9:3984698 3.73E-46 transposed
Cme11g00229 Cme-Chr11:2644836 Cme09g00420 Cme-Chr9:3984698 5.31E-52 transposed
Cme12g01670 Cme-Chr12:23697413 Cme09g00420 Cme-Chr9:3984698 6.16E-62 wgd
Cme04g01850 Cme-Chr4:26268072 Cme09g00420 Cme-Chr9:3984698 2.75E-82 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41923 PF03195 LOB 9.70E-42 No_clan Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00420 - - csv:101216489 323.553