Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme09g00420 | ATGGCTTCTTCAAGCTATACAAACTCACCATGTGCAGCATGCAAATTCCTAAGAAGAAAATGCTTAGCTGATTGCATATTTGCACCCTATTTTCCCCCTGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTTCTCAATGAGGTTCAACCCCATCAGCGCGAGGATGCCGTAAATTCTCTAGCTTATGAGGCCGAGGCTCGTATGAAAGACCCTGTCTACGGCTGCGTTGGGGCCATCTCCGTTTTGCAACGACAAGTTATTCGTCTCCAAAAAGAGCTTGACGCTACGAATGCTGATTTGGTACGATATGCAAGCGGTAGCGCCCGCCCGCCCTCACAATATGGAAGGAGAGCAACAACTGCCTCGGTGAGTAGTACTCGCCATCATTCTGGTCTGTCTTTTCTTTCTCCCTTGAGCAGTAATCATCACGATGATCCTTATTGCCATGAAAATGAGGAAGGCAATTGA | 498 | 47.19 | MASSSYTNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYASGSARPPSQYGRRATTASVSSTRHHSGLSFLSPLSSNHHDDPYCHENEEGN | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 3984698 | 3985376 | - | MELO3C021578.2.1 | Cme09g00420 | 337280 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme09g00420 | 165 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 25 | 1 | 132 | - | - | |
| Cme09g00420 | 165 | Coils | Coil | 89 | 109 | - | - | |
| Cme09g00420 | 165 | MobiDBLite | consensus disorder prediction | 122 | 150 | - | - | |
| Cme09g00420 | 165 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
| Cme09g00420 | 165 | MobiDBLite | consensus disorder prediction | 114 | 165 | - | - | |
| Cme09g00420 | 165 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 132 | - | - | |
| Cme09g00420 | 165 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 106 | IPR004883 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme04g01850 | Cme09g00420 | CCT | |
| Cme04g01850 | Cme09g00420 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g00267 | Cme-Chr3:3441789 | Cme09g00420 | Cme-Chr9:3984698 | 2.56E-49 | dispersed | |
| Cme09g00420 | Cme-Chr9:3984698 | Cme11g01727 | Cme-Chr11:25352249 | 2.94E-47 | dispersed | |
| Cme03g01034 | Cme-Chr3:19570987 | Cme09g00420 | Cme-Chr9:3984698 | 9.24E-43 | transposed | |
| Cme03g02160 | Cme-Chr3:28717470 | Cme09g00420 | Cme-Chr9:3984698 | 1.13E-20 | transposed | |
| Cme10g01224 | Cme-Chr10:12573051 | Cme09g00420 | Cme-Chr9:3984698 | 3.73E-46 | transposed | |
| Cme11g00229 | Cme-Chr11:2644836 | Cme09g00420 | Cme-Chr9:3984698 | 5.31E-52 | transposed | |
| Cme12g01670 | Cme-Chr12:23697413 | Cme09g00420 | Cme-Chr9:3984698 | 6.16E-62 | wgd | |
| Cme04g01850 | Cme-Chr4:26268072 | Cme09g00420 | Cme-Chr9:3984698 | 2.75E-82 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41923 | PF03195 | LOB | 9.70E-42 | No_clan | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme09g00420 | - | - | csv:101216489 | 323.553 |