Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00452 ATGGCGGCTTCTTCTTCTTCTTCTCTTTACTTTTTGTTTCTTCTTTTATCTCTTTGTTTCTTCTTGTCTATGAGTACTGCTCCAATACCTTCCAATTCCTCCTTACCTTTTGTTCATCAACATCCTCATCTCGCGGTTGAAGAAGTTCAAAGGAGCATAAATGGATCAAGAAGAAATTTGGGGTATTTATCATGCGGAACAGGAAACCCAATAGACGATTGTTGGAGATGTGATTCTAATTGGGAAACAAACCGTAAACGCTTAGCCGATTGCGCCATCGGCTTTGGCAAAAACGCAATCGGCGGCAAAAACGGTCGTTTCTATGTAGTCACAGACGCTAGGGACGATGACCCACTGAACCCTCGTCCAGGCACTCTCCGCCATGCAGTCATCCAAAACGAACCCTTATGGATCATCTTCAAGCGCGACATGGTAATCCAACTCGAACAAGAACTAGTCATGAACTCGTTCAAAACCATCGACGGACGTGGCGCCAGCGTCCACGTGGCAGGTGGCCCATGTATTAAAATCCACTACGCGACAAATATAATCATCCACGGCATCCATATTCACGATTGCAAGAGAGGCGGGAATGCTAACATACGGGACTCCCCACAACATGCTGGTTGGTGGACTGCATCTGACGGTGATGGTGTCTCCATTTTAGGTGGAAAACAAATCTGGATCGATCATTGCTCTTTGTCTAATTGTAACGATGGGTTGATTGATGCAATTCATGGATCAACAGCTATAACTATATCCAATAACTATATGACACATCATGATAAGGTTATGCTATTGGGACACAGTGATTCTTTTACCCAAGATAAAAATATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAAGGACTTGTCCAACGAATGCCAAGATGTAGACATGGATATTTTCATGTTGTGAACAACGATTACACTCATTGGGAAATGTATGCCATCGGAGGGAGTGCTTCGCCCACTATATACAGCCAAGGTAATAGATTTGTGGCGCCTTATAATCGGTTTCGAAAGGAGGTAACAAAGCATGAAGACGCACCCGAGAGCGAGTGGCGCTATTGGAATTGGCGTTCTGAAGGTGATATGTTGTTGAATGGCGCCTATTTTCGCCAGTCAGGCGCAGGTGCCCGCTCTAGCTATGCACGAGCTTATAGCCTCAGCGCTAGACCTTCGTCTCTCGTCGGAGATATCACTCTCACTGCAGGTGCTCTCAATTGTCGCAGGGGCTCTCGTTGCTAA 1254 45.22 MAASSSSSLYFLFLLLSLCFFLSMSTAPIPSNSSLPFVHQHPHLAVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDARDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLEQELVMNSFKTIDGRGASVHVAGGPCIKIHYATNIIIHGIHIHDCKRGGNANIRDSPQHAGWWTASDGDGVSILGGKQIWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFVAPYNRFRKEVTKHEDAPESEWRYWNWRSEGDMLLNGAYFRQSGAGARSSYARAYSLSARPSSLVGDITLTAGALNCRRGSRC 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4346244 4348157 + MELO3C021607.2.1 Cme09g00452 337312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00452 417 Gene3D - 68 410 IPR012334 -
Cme09g00452 417 SUPERFAMILY Pectin lyase-like 43 411 IPR011050 -
Cme09g00452 417 SMART amb_all 143 340 IPR002022 -
Cme09g00452 417 Pfam Pectate lyase 152 334 IPR002022 -
Cme09g00452 417 PANTHER PECTATE LYASE 18-RELATED 15 414 IPR045032 GO:0030570
Cme09g00452 417 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Cme09g00452 417 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Cme09g00452 417 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Cme09g00452 417 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Cme09g00452 417 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Cme09g00452 417 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Cme09g00452 417 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Cme09g00452 417 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Cme09g00452 417 PANTHER PECTATE LYASE 15 414 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00452 Cme-Chr9:4346244 Cme10g00106 Cme-Chr10:731398 0 dispersed
Cme09g00452 Cme-Chr9:4346244 Cme12g01634 Cme-Chr12:23484887 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00452 K01728 - csv:101217834 800.045