Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00465 ATGGCACCGACTATTTCCACAATCTTTCTCATATTATTCTCTAATTTCTTGCTAACAATGTCATTACCAATCGAAAACAGAGCACTCATCGGAGGTCTTTACGGCGCCGGACCATGGCAGAATGCCCATGCTACTTTCTACGGCGGAAATGACGCTGCCGGCACAATGGGTGGTGCGTGTGGCTACGGCAACTTGTACAGCCAAGGGTATGGCGTGAACACAGCGGCGCTCAGCACAGCCCTGTTCAACGATGGATACAGCTGCGGAGCTTGTTTCGAGATCAAGTGTGTTAATGACCCGCAATGGTGCCACGCCGGTAACCCTTCTATTTTTGTGACGGCCACCAATTTTTGTCCTCCCAATTATGCTCTGCCTAATGACAATGGTGGATGGTGCAACCCTCCTCGCCCTCACTTCGACCTCTCCATGCCCATGTTTCTTAAGATTGCCCAATATCGTGCCGGTATCGTTCCTGTCTCCTTTCGCAGAGTGGCATGCCGGAGGGAGGGAGGAATGAGGTTTACGATCAACGGATTCAAATATTTCAATTTGGTATTGATAACCAACGTGGCAGGGGCAGGGGATATTGCGAGTGTGAGTATCAAAGGGTCGAAGACAGGGTGGATGAGTATGACACGTAATTGGGGTCAAAACTGGCAGTCAAACACCGTTTTGGTGGGTCAGACACTTTCGTTTAGGGTTAAGAGCAGCGATGGTCGGATTTCAACTTCTTCCAATATTGTTCCTTCTCATTGGCAGTTTGGTCAAACTTTCACCGGCAAAAACTTCTAA 792 48.86 MAPTISTIFLILFSNFLLTMSLPIENRALIGGLYGAGPWQNAHATFYGGNDAAGTMGGACGYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRRVACRREGGMRFTINGFKYFNLVLITNVAGAGDIASVSIKGSKTGWMSMTRNWGQNWQSNTVLVGQTLSFRVKSSDGRISTSSNIVPSHWQFGQTFTGKNF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4473432 4474673 + MELO3C021619.2.1 Cme09g00465 337325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00465 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 260 IPR007117 -
Cme09g00465 263 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Cme09g00465 263 Gene3D - 172 263 IPR036749 -
Cme09g00465 263 SMART dpbb_1 74 161 IPR007112 -
Cme09g00465 263 SUPERFAMILY Barwin-like endoglucanases 38 189 IPR036908 -
Cme09g00465 263 Pfam Lytic transglycolase 74 161 IPR009009 -
Cme09g00465 263 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Cme09g00465 263 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Cme09g00465 263 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Cme09g00465 263 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Cme09g00465 263 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Cme09g00465 263 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576
Cme09g00465 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 171 IPR007112 -
Cme09g00465 263 PANTHER EXPANSIN-A6 19 263 - -
Cme09g00465 263 SUPERFAMILY PHL pollen allergen 168 260 IPR036749 -
Cme09g00465 263 Gene3D - 33 167 IPR036908 -
Cme09g00465 263 PANTHER EXPANSIN-A15 19 263 IPR002963 GO:0009664
Cme09g00465 263 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Cme09g00465 263 PRINTS Expansin signature 96 107 IPR002963 GO:0009664
Cme09g00465 263 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Cme09g00465 263 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Cme09g00465 263 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Cme09g00465 263 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Cme09g00465 263 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Cme09g00465 263 PRINTS Expansin signature 217 238 IPR002963 GO:0009664
Cme09g00465 263 PRINTS Expansin signature 246 262 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02411 Cme-Chr8:30997262 Cme09g00465 Cme-Chr9:4473432 1.46E-155 dispersed
Cme09g00465 Cme-Chr9:4473432 Cme10g00899 Cme-Chr10:6397055 3.59E-152 dispersed
Cme11g01811 Cme-Chr11:26286236 Cme09g00465 Cme-Chr9:4473432 2.85E-92 dispersed
Cme09g00465 Cme-Chr9:4473432 Cme11g01314 Cme-Chr11:19942997 2.23E-154 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00465 - - csv:101216168 496.893