Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00505 TTTCATCCTTATTTTCCCTTTTTTTCTTTCCCCTTTAAAGAAAAAAAAACATTTTTATTTTTATTTTTCCATAATTTTTGTGTTCATAATTACCCTCAATCCATGGTTTTCTCTTCAGTTCCCGTGTTCCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAAGTAAGTGGTTGCGAGACCAATAATGCTCAACACCTTCCACCTCCGGCACCATCAGCTAATGGTGGCAGCGGTGGAGGCAGCGGAGGAGGCGGTGGAGGTGGTGGCGGACCTGGATCAATTAGACCAGGGTCAATGACGGATCGAGCTAGGTTAGCAAAGATACCACAACCGGAAGCAGGGTTAAAGTGCCCTAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACGTGCCGCCGGTATTGGACAAGAGGTGGAGCGATGAGGAACGTACCGGTTGGAGGCGGGTGTCGGCGGTCTAGTAAGAGAAGTAGCAAAGGAGGAAGCAATAATAGGTCAAAATCACCAGGAGGATCAAGCACTTCAACAAGCACAGTATCATCAAATAGTTGTACAACAGATATAATTAGCCAACAATTAGCTCATCATCATCATCCTCCTCCAACAACCCATTTGCCCTTTTTCTCTCAAAATTTACACCATCTTAGTGAATTTGGAAACCTTGGTTTAAATTTTGAAGCCCTTCATATCCCTAATTCACTCCCATCATCAGCTGAATCATCCTCAGTTTTATCAAGTGGAATTATTTCAGATCATCATCAATGGAAAATACCCCTTTTTGGAAATTTACATCAACAAAATGGGATTTATTCAAACTTCATGGCTGATCAAGATCATCATCATCAACAACAAACAGCTGATTTCACAAATTATCAAAGGTTGTCAAAGCCATTATTGGAAAATGGATTCAATCACCAATTGGAGAATATTAATATCAATAACAATAACAATAGTATGAAAATCTTGGAGGATACACAAGGGGTTAACAATTTGTCAAGAAATTTTCTTGGAATTCATCCAAATGAAGATCAATTCTGGAATTCTACAACAACAACAACAACAGCTGGAAATATTGGATGGAGTAGTGATCAAATTTCAGATCATTTCAACTCTACTTCTTCCACTACTCATCTTTTGTAA 1194 39.53 FHPYFPFFSFPFKEKKTFLFLFFHNFCVHNYPQSMVFSSVPVFLDPPNWPSQQPNQLQVSGCETNNAQHLPPPAPSANGGSGGGSGGGGGGGGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNNRSKSPGGSSTSTSTVSSNSCTTDIISQQLAHHHHPPPTTHLPFFSQNLHHLSEFGNLGLNFEALHIPNSLPSSAESSSVLSSGIISDHHQWKIPLFGNLHQQNGIYSNFMADQDHHHQQQTADFTNYQRLSKPLLENGFNHQLENININNNNNSMKILEDTQGVNNLSRNFLGIHPNEDQFWNSTTTTTTAGNIGWSSDQISDHFNSTSSTTHLL 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4859893 4861345 - MELO3C021646.2.1 Cme09g00505 337365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00505 397 MobiDBLite consensus disorder prediction 63 103 - -
Cme09g00505 397 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 40 371 - -
Cme09g00505 397 PANTHER DOF ZINC FINGER PROTEIN DOF2.4-LIKE 47 363 - -
Cme09g00505 397 ProSitePatterns Zinc finger Dof-type signature. 121 157 IPR003851 GO:0003677|GO:0006355
Cme09g00505 397 Pfam Dof domain, zinc finger 119 173 IPR003851 GO:0003677|GO:0006355
Cme09g00505 397 MobiDBLite consensus disorder prediction 173 200 - -
Cme09g00505 397 MobiDBLite consensus disorder prediction 160 200 - -
Cme09g00505 397 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 371 IPR045174 GO:0003700|GO:0006355
Cme09g00505 397 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 47 363 IPR045174 GO:0003700|GO:0006355
Cme09g00505 397 ProSiteProfiles Zinc finger Dof-type profile. 119 173 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02396 Cme-Chr8:30824290 Cme09g00505 Cme-Chr9:4859893 3.07E-40 dispersed
Cme09g00505 Cme-Chr9:4859893 Cme12g00200 Cme-Chr12:2069742 2.14E-54 dispersed
Cme09g00505 Cme-Chr9:4859893 Cme10g00889 Cme-Chr10:6268570 1.98E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41926 PF02701 zf-Dof 5.30E-31 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00505 - - cmo:103498163 623.624