Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00505 TTTCATCCTTATTTTCCCTTTTTTTCTTTCCCCTTTAAAGAAAAAAAAACATTTTTATTTTTATTTTTCCATAATTTTTGTGTTCATAATTACCCTCAATCCATGGTTTTCTCTTCAGTTCCCGTGTTCCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAAGTAAGTGGTTGCGAGACCAATAATGCTCAACACCTTCCACCTCCGGCACCATCAGCTAATGGTGGCAGCGGTGGAGGCAGCGGAGGAGGCGGTGGAGGTGGTGGCGGACCTGGATCAATTAGACCAGGGTCAATGACGGATCGAGCTAGGTTAGCAAAGATACCACAACCGGAAGCAGGGTTAAAGTGCCCTAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACGTGCCGCCGGTATTGGACAAGAGGTGGAGCGATGAGGAACGTACCGGTTGGAGGCGGGTGTCGGCGGTCTAGTAAGAGAAGTAGCAAAGGAGGAAGCAATAATAGGTCAAAATCACCAGGAGGATCAAGCACTTCAACAAGCACAGTATCATCAAATAGTTGTACAACAGATATAATTAGCCAACAATTAGCTCATCATCATCATCCTCCTCCAACAACCCATTTGCCCTTTTTCTCTCAAAATTTACACCATCTTAGTGAATTTGGAAACCTTGGTTTAAATTTTGAAGCCCTTCATATCCCTAATTCACTCCCATCATCAGCTGAATCATCCTCAGTTTTATCAAGTGGAATTATTTCAGATCATCATCAATGGAAAATACCCCTTTTTGGAAATTTACATCAACAAAATGGGATTTATTCAAACTTCATGGCTGATCAAGATCATCATCATCAACAACAAACAGCTGATTTCACAAATTATCAAAGGTTGTCAAAGCCATTATTGGAAAATGGATTCAATCACCAATTGGAGAATATTAATATCAATAACAATAACAATAGTATGAAAATCTTGGAGGATACACAAGGGGTTAACAATTTGTCAAGAAATTTTCTTGGAATTCATCCAAATGAAGATCAATTCTGGAATTCTACAACAACAACAACAACAGCTGGAAATATTGGATGGAGTAGTGATCAAATTTCAGATCATTTCAACTCTACTTCTTCCACTACTCATCTTTTGTAA 1194 39.53 FHPYFPFFSFPFKEKKTFLFLFFHNFCVHNYPQSMVFSSVPVFLDPPNWPSQQPNQLQVSGCETNNAQHLPPPAPSANGGSGGGSGGGGGGGGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNNRSKSPGGSSTSTSTVSSNSCTTDIISQQLAHHHHPPPTTHLPFFSQNLHHLSEFGNLGLNFEALHIPNSLPSSAESSSVLSSGIISDHHQWKIPLFGNLHQQNGIYSNFMADQDHHHQQQTADFTNYQRLSKPLLENGFNHQLENININNNNNSMKILEDTQGVNNLSRNFLGIHPNEDQFWNSTTTTTTAGNIGWSSDQISDHFNSTSSTTHLL 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4859893 4861345 - MELO3C021646.2.1 Cme09g00505 337365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00505 397 MobiDBLite consensus disorder prediction 63 103 - -
Cme09g00505 397 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 40 371 - -
Cme09g00505 397 PANTHER DOF ZINC FINGER PROTEIN DOF2.4-LIKE 47 363 - -
Cme09g00505 397 ProSitePatterns Zinc finger Dof-type signature. 121 157 IPR003851 GO:0003677|GO:0006355
Cme09g00505 397 Pfam Dof domain, zinc finger 119 173 IPR003851 GO:0003677|GO:0006355
Cme09g00505 397 MobiDBLite consensus disorder prediction 173 200 - -
Cme09g00505 397 MobiDBLite consensus disorder prediction 160 200 - -
Cme09g00505 397 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 371 IPR045174 GO:0003700|GO:0006355
Cme09g00505 397 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 47 363 IPR045174 GO:0003700|GO:0006355
Cme09g00505 397 ProSiteProfiles Zinc finger Dof-type profile. 119 173 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00505 - - - cmo:103498163 623.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02396 Cme-Chr8:30824290 Cme09g00505 Cme-Chr9:4859893 3.07E-40 dispersed
Cme09g00505 Cme-Chr9:4859893 Cme12g00200 Cme-Chr12:2069742 2.14E-54 dispersed
Cme09g00505 Cme-Chr9:4859893 Cme10g00889 Cme-Chr10:6268570 1.98E-57 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01293 CCT 14 178 C2C2-Dof Transcription Factor Family AT1G29160 55.6 3.7e-44 174.9
Cme08g00224 CCT 6 164 C2C2-Dof Transcription Factor Family AT1G29160 52.0 1.2e-39 159.8
Cme09g01866 . 56 151 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.4e-42 168.7
Cme12g01293 CCT 14 178 C2C2-Dof Transcription Factor Family AT2G34140 54.3 1.2e-42 169.9
Cme08g00224 CCT 6 164 C2C2-Dof Transcription Factor Family AT2G34140 50.9 7.8e-39 157.1
Cme04g02612 CCT,ECH 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.6e-40 163.7
Cme10g00889 . 33 163 C2C2-Dof Transcription Factor Family AT2G37590 62.4 9.8e-38 154.5
Cme09g00505 . 35 169 C2C2-Dof Transcription Factor Family AT2G37590 64.0 2.2e-37 153.3
Cme12g00200 CCT,ECH 66 140 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.9e-37 152.1
Cme09g01866 . 56 149 C2C2-Dof Transcription Factor Family AT4G24060 79.8 7.3e-44 174.9
Cme04g01994 . 136 514 C2C2-Dof Transcription Factor Family AT5G39660 51.4 1.5e-81 300.4
Cme12g00200 CCT,ECH 1 140 C2C2-Dof Transcription Factor Family AT5G02460 56.5 1.4e-38 157.5
Cme08g02396 CCT,ECH 43 123 C2C2-Dof Transcription Factor Family AT5G02460 82.7 2.0e-37 153.7
Cme09g00505 . 35 169 C2C2-Dof Transcription Factor Family AT5G02460 62.1 4.5e-37 152.5
Cme04g02612 CCT,ECH 54 137 C2C2-Dof Transcription Factor Family AT3G55370 78.6 4.2e-37 152.5
Cme02g01804 CCT 28 335 C2C2-Dof Transcription Factor Family AT5G60850 50.5 7.0e-46 181.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41926 PF02701 zf-Dof 5.30E-31 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g00505 Cme_Chr09 FPKM 6.267295 4.691793 0.857985 0.397155 4.444391 2.65154 4.159009 0.977855 1.392977 1.017654