Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00562 ATGGAGCAACCCGCCGGAATGTTGAGTCAAGCAAGGCCTTATATTGCAGTCATTCTTCAGCAGTTCATCACTGCCGGAATGGTGATCATTTCCAAGTTTGCTCTCAACCAAGGGCTCAACCAGCACGTTTTAGTCGTCTACCGATACACCATAGCTACCATTGTTGTCGCTCCCTTTGCTTTCGTTTTCGAGAGGAAAGTGAGACCCAGGATGACTTGGTCCATTTTTGGGAAGGTTGTGTTGCTTGGACTATTAGAACCTGCACTTGACCAAAACTTATATTATACGGGCATGAAGTATACGACAGCAACCTTTGCATCCGCTATGACTAATATGACCCCTGGCTTAGTATTTCTCATGGCTTGGGCTGTTCGGCTCGAGATAGTCGATGTAAGACAGTTGTCAAGCCAGGCAAAGATATTAGGGACAGTGGTGGCAGTGGGAGGGGCAATGATAATGACTACAGTCAGAGGACCAATCTTGAATCTGCCATGGACAAATCACAACATCCATGACCATTCTACAACTGCAGTTAACCAGCAAGATCTTCTCAAGGGTTCTCTCATGATCCTTGTTGGTTGTATTCTTTGGTCTGTTTTCAATGTTCTTCAGGCAATTACAATAAAAGTATACCCAGCACAACTGTCCTTAACAACTTTGATATGCTTCACCGGCGCCGTACAAGCCTCAGTGATAGCTTTTGCAATGGAAGGCCACAAACCTGCTGCCTGGTCATTACATTTAGATTCAACCCTCTTAGCTCCTTTGTACAGTGGAATCATGTCTTCAGGAGTTTCGTATACTATCCAATCGGCAGTGATGAAAACGAAAGGGCCAGTTTTCTCAAGTACATTTGGTCCACTGAGCTTGGTTATTGTAGCAATCATTAGTTCATTCGCATTATCCGAGATATTATATATCGGAAGGGTTATTGGAGCAGCTGTGATTATTACAGGCCTTTATTTGGTTCTTTGGGGTAAAATCAAGGGTCAAGCTCTATACAAGTTAGATAGTGAGAAGATGACCCCATCAGATCAGAAACTGACTGCCATAACTGACAAATCTAAGACTTCAGATAAAGAACTTGGAGTTGATCTTGCTAGGATAAAAACAGTGGATGATTCAGTTTGA 1131 43.15 MEQPAGMLSQARPYIAVILQQFITAGMVIISKFALNQGLNQHVLVVYRYTIATIVVAPFAFVFERKVRPRMTWSIFGKVVLLGLLEPALDQNLYYTGMKYTTATFASAMTNMTPGLVFLMAWAVRLEIVDVRQLSSQAKILGTVVAVGGAMIMTTVRGPILNLPWTNHNIHDHSTTAVNQQDLLKGSLMILVGCILWSVFNVLQAITIKVYPAQLSLTTLICFTGAVQASVIAFAMEGHKPAAWSLHLDSTLLAPLYSGIMSSGVSYTIQSAVMKTKGPVFSSTFGPLSLVIVAIISSFALSEILYIGRVIGAAVIITGLYLVLWGKIKGQALYKLDSEKMTPSDQKLTAITDKSKTSDKELGVDLARIKTVDDSV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5792882 5796091 + MELO3C025464.2.1 Cme09g00562 337422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00562 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 328 - -
Cme09g00562 376 PANTHER WAT1-RELATED PROTEIN 9 335 - -
Cme09g00562 376 Pfam EamA-like transporter family 13 153 IPR000620 GO:0016020|GO:0016021
Cme09g00562 376 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020|GO:0016021
Cme09g00562 376 PANTHER WAT1-RELATED PROTEIN 9 335 IPR030184 GO:0016021|GO:0022857
Cme09g00562 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00551 Cme-Chr9:5602356 Cme09g00562 Cme-Chr9:5792882 1.56E-132 dispersed
Cme09g00554 Cme-Chr9:5679198 Cme09g00562 Cme-Chr9:5792882 1.19E-113 dispersed
Cme09g00562 Cme-Chr9:5792882 Cme10g00877 Cme-Chr10:6138411 4.89E-145 dispersed
Cme09g00556 Cme-Chr9:5743344 Cme09g00562 Cme-Chr9:5792882 4.01E-112 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00562 - - csv:101222430 692.189