Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00610 ATGGGGAAGAAGGGGGGTTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATCGGAGACAGTGACATCTGCAGAGCCAGCTTCATTCGATGTGTCTGTTCTACCAATTGAAGAGGTGAAATTAGCAGATGCAGAGAACGAACAGAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAATCGCTGCCGAGGCAGCCGTTGCAGCTGCTCAGGCTGCAGCGGAGGTCGTTCGGCTTACTACTATCCCTCGATACTCTGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATTTGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTCAAAAGACAAGCAACAACCACATTAAGATGTATGCAGACTCTTGCCCGAGTCCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGACAGCTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAGCAATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTGGCTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCACTGGCGTATGCTTACACTCATCAGAATTCATGGAAGAATTATTCAAAATCTGCAAACTCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCTATGGGAAACTAAGAGCACAATCGATTATCACGATCGTGGCTCCGTCAAGAGCGTGATCAGCCACACAACCTCGATCGGAGACATTGCCAAAGCTTACGCCCGTCGCGATCTCAATCTCGACATCATCAAGCCGTTTCCAAGGACTCCAACGAGCCAAAAAACAAGCCGAGCTCCGAGTCACCAATCGCCAGCGACTCCTACGAAAGCGTATTCGTCACTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATTGGGTGGGGCGGAGACGCCGATTCCAGAAGCGCATTGAGCGTCAAATCGGAAAGGTACAGGCGACACAGCATTGCTGGATCATCAGTGAGAGATGATGAAAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCATCGACAGAAGCAGCGAGGGCCAGGTCCCGGTTGTCGAGTCCGATGGGAACGGAGAAGACGGCGGGAACTCCGGCGAGTGTTGGAGCAAAGAAAAGGCTGTCATTCCCAGGCTCGCCGGCGAACTCAAGGAGGCAGTCAGGTCCGCCGAAAATAGACGCTAGTCCGATAAAGAATGTGGGAGAGAGAGAATTTACCGGGGAGAGCAGATAG 1449 49.48 MGKKGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKSETVTSAEPASFDVSVLPIEEVKLADAENEQSKHAYSVAIATAIAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSASNEWNDSTKSKEQIEARLANRQEAATRRERALAYAYTHQNSWKNYSKSANSTFMDPNNPRWGWSWLERWMAARLWETKSTIDYHDRGSVKSVISHTTSIGDIAKAYARRDLNLDIIKPFPRTPTSQKTSRAPSHQSPATPTKAYSSLSAGRKLKPDSPRGIGWGGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAGTPASVGAKKRLSFPGSPANSRRQSGPPKIDASPIKNVGEREFTGESR 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6408904 6413034 - MELO3C025505.2.1 Cme09g00610 337470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00610 482 MobiDBLite consensus disorder prediction 325 352 - -
Cme09g00610 482 MobiDBLite consensus disorder prediction 396 412 - -
Cme09g00610 482 MobiDBLite consensus disorder prediction 17 46 - -
Cme09g00610 482 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Cme09g00610 482 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515
Cme09g00610 482 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 468 - -
Cme09g00610 482 MobiDBLite consensus disorder prediction 323 482 - -
Cme09g00610 482 MobiDBLite consensus disorder prediction 378 395 - -
Cme09g00610 482 Gene3D - 93 140 - -
Cme09g00610 482 SMART iq_5 113 135 IPR000048 GO:0005515
Cme09g00610 482 PANTHER IQ-DOMAIN 5-RELATED 1 468 - -
Cme09g00610 482 Coils Coil 177 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00610 - - - csv:101209731 868.226
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00490 Cme-Chr1:3525937 Cme09g00610 Cme-Chr9:6408904 8.18E-18 dispersed
Cme04g02549 Cme-Chr4:31670860 Cme09g00610 Cme-Chr9:6408904 9.23E-82 dispersed
Cme08g00247 Cme-Chr8:1613196 Cme09g00610 Cme-Chr9:6408904 1.48E-34 dispersed
Cme08g02328 Cme-Chr8:30198726 Cme09g00610 Cme-Chr9:6408904 4.04E-129 dispersed
Cme09g00610 Cme-Chr9:6408904 Cme09g01169 Cme-Chr9:16427891 3.45E-41 dispersed
Cme09g01986 Cme-Chr9:23705692 Cme09g00610 Cme-Chr9:6408904 1.29E-20 dispersed
Cme09g00610 Cme-Chr9:6408904 Cme10g00057 Cme-Chr10:431699 6.62E-137 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme09g00610 . 1 470 IQD Protein Family AT3G52290 54.2 1.6e-101 366.7
Cme02g00846 . 1 406 IQD Protein Family AT3G22190 56.7 1.3e-95 347.1
Cme07g00215 . 1 438 IQD Protein Family AT2G26180 60.5 1.0e-116 417.2
Cme08g00247 . 59 332 IQD Protein Family AT2G33990 52.5 3.2e-63 238.8
Cme07g01328 . 40 223 IQD Protein Family AT2G33990 53.5 5.8e-49 191.4
Cme08g00247 . 59 290 IQD Protein Family AT3G15050 50.4 4.8e-56 214.9
Cme07g01328 . 43 216 IQD Protein Family AT3G15050 61.6 1.0e-53 207.2
Cme11g02263 . 1 512 IQD Protein Family AT4G00820 50.4 5.9e-109 391.7
Cme06g00023 . 3 359 IQD Protein Family AT4G00820 52.8 3.1e-81 299.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g00610 Cme_Chr09 FPKM 11.847906 12.641623 8.256483 7.016792 6.679486 5.491741 6.261466 7.83257 8.229678 8.008084