Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00610 ATGGGGAAGAAGGGGGGTTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATCGGAGACAGTGACATCTGCAGAGCCAGCTTCATTCGATGTGTCTGTTCTACCAATTGAAGAGGTGAAATTAGCAGATGCAGAGAACGAACAGAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAATCGCTGCCGAGGCAGCCGTTGCAGCTGCTCAGGCTGCAGCGGAGGTCGTTCGGCTTACTACTATCCCTCGATACTCTGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATTTGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTCAAAAGACAAGCAACAACCACATTAAGATGTATGCAGACTCTTGCCCGAGTCCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGACAGCTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAGCAATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTGGCTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCACTGGCGTATGCTTACACTCATCAGAATTCATGGAAGAATTATTCAAAATCTGCAAACTCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCTATGGGAAACTAAGAGCACAATCGATTATCACGATCGTGGCTCCGTCAAGAGCGTGATCAGCCACACAACCTCGATCGGAGACATTGCCAAAGCTTACGCCCGTCGCGATCTCAATCTCGACATCATCAAGCCGTTTCCAAGGACTCCAACGAGCCAAAAAACAAGCCGAGCTCCGAGTCACCAATCGCCAGCGACTCCTACGAAAGCGTATTCGTCACTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATTGGGTGGGGCGGAGACGCCGATTCCAGAAGCGCATTGAGCGTCAAATCGGAAAGGTACAGGCGACACAGCATTGCTGGATCATCAGTGAGAGATGATGAAAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCATCGACAGAAGCAGCGAGGGCCAGGTCCCGGTTGTCGAGTCCGATGGGAACGGAGAAGACGGCGGGAACTCCGGCGAGTGTTGGAGCAAAGAAAAGGCTGTCATTCCCAGGCTCGCCGGCGAACTCAAGGAGGCAGTCAGGTCCGCCGAAAATAGACGCTAGTCCGATAAAGAATGTGGGAGAGAGAGAATTTACCGGGGAGAGCAGATAG 1449 49.48 MGKKGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKSETVTSAEPASFDVSVLPIEEVKLADAENEQSKHAYSVAIATAIAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSASNEWNDSTKSKEQIEARLANRQEAATRRERALAYAYTHQNSWKNYSKSANSTFMDPNNPRWGWSWLERWMAARLWETKSTIDYHDRGSVKSVISHTTSIGDIAKAYARRDLNLDIIKPFPRTPTSQKTSRAPSHQSPATPTKAYSSLSAGRKLKPDSPRGIGWGGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAGTPASVGAKKRLSFPGSPANSRRQSGPPKIDASPIKNVGEREFTGESR 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6408904 6413034 - MELO3C025505.2.1 Cme09g00610 337470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00610 482 MobiDBLite consensus disorder prediction 325 352 - -
Cme09g00610 482 MobiDBLite consensus disorder prediction 396 412 - -
Cme09g00610 482 MobiDBLite consensus disorder prediction 17 46 - -
Cme09g00610 482 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Cme09g00610 482 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515
Cme09g00610 482 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 468 - -
Cme09g00610 482 MobiDBLite consensus disorder prediction 323 482 - -
Cme09g00610 482 MobiDBLite consensus disorder prediction 378 395 - -
Cme09g00610 482 Gene3D - 93 140 - -
Cme09g00610 482 SMART iq_5 113 135 IPR000048 GO:0005515
Cme09g00610 482 PANTHER IQ-DOMAIN 5-RELATED 1 468 - -
Cme09g00610 482 Coils Coil 177 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00490 Cme-Chr1:3525937 Cme09g00610 Cme-Chr9:6408904 8.18E-18 dispersed
Cme04g02549 Cme-Chr4:31670860 Cme09g00610 Cme-Chr9:6408904 9.23E-82 dispersed
Cme08g00247 Cme-Chr8:1613196 Cme09g00610 Cme-Chr9:6408904 1.48E-34 dispersed
Cme08g02328 Cme-Chr8:30198726 Cme09g00610 Cme-Chr9:6408904 4.04E-129 dispersed
Cme09g00610 Cme-Chr9:6408904 Cme09g01169 Cme-Chr9:16427891 3.45E-41 dispersed
Cme09g01986 Cme-Chr9:23705692 Cme09g00610 Cme-Chr9:6408904 1.29E-20 dispersed
Cme09g00610 Cme-Chr9:6408904 Cme10g00057 Cme-Chr10:431699 6.62E-137 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00610 - - csv:101209731 868.226