Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00618 ATGGGTAAGGAAAAGACTCACATCAACATTGTAGTCATTGGCCATGTCGACTCTGGTAAGTCGACCACTACTGGCCATTTGATTTACAAGCTTGGAGGTATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCGTTCAAGTATGCCTGGGTGTTGGATAAGCTTAAGGCTGAACGTGAGCGTGGTATCACAATTGATATTGCTTTGTGGAAGTTCGAAACCACCAAGTACTACTGCACTGTTATTGATGCTCCTGGGCATCGTGATTTCATCAAGAACATGATTACTGGAACTTCCCAGGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAACGTGGGGTTCAACGTGAAGAATGTTGCCGTGAAGGATCTCAAGCGTGGTTATGTTGCCTCAAATTCCAAGGATGATCCTGCCAAGGAAGCTGCCAATTTCACTTCCCAAGTTATCATCATGAACCATCCAGGACAGATTGGAAATGGTTATGCACCTGTCCTCGATTGCCACACATCTCACATTGCTGTCAAATTTGCCGAGATTTTAACCAAGATTGACAGGCGATCTGGAAAAGAACTGGAGAAAGAGCCCAAGTTTTTGAAGAACGGAGATGCTGGATTTGTTAAGATGATTCCCACCAAACCCATGGTGGTGGAAACATTCTCCGAGTATCCGCCACTTGGACGATTTGCCGTGAGGGACATGCGTCAAACTGTGGCTGTTGGTGTCATCAAGGCCGTCGAGAAGAAGGATGCATCCGGTGCCAAGGTCACCAAATCAGCAGCTAAGAAATCAGGCAAGTGA 822 46.35 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTKSAAKKSGK 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6539075 6546190 + MELO3C025511.2.1 Cme09g00618 337478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00618 273 PANTHER ELONGATION FACTOR 1-ALPHA 1 109 271 - -
Cme09g00618 273 Pfam Elongation factor Tu C-terminal domain 145 253 IPR004160 -
Cme09g00618 273 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 150 253 IPR009001 -
Cme09g00618 273 Gene3D - 1 112 IPR027417 -
Cme09g00618 273 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 108 IPR000795 GO:0003924|GO:0005525
Cme09g00618 273 PANTHER TRANSLATION FACTOR 109 271 - -
Cme09g00618 273 PANTHER TRANSLATION FACTOR 1 108 - -
Cme09g00618 273 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Cme09g00618 273 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Cme09g00618 273 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Cme09g00618 273 PANTHER ELONGATION FACTOR 1-ALPHA 1 1 108 - -
Cme09g00618 273 Pfam Elongation factor Tu GTP binding domain 5 108 IPR000795 GO:0003924|GO:0005525
Cme09g00618 273 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Cme09g00618 273 Gene3D Translation factors 147 254 - -
Cme09g00618 273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 108 IPR027417 -
Cme09g00618 273 SUPERFAMILY Translation proteins 102 145 IPR009000 -
Cme09g00618 273 CDD EF1_alpha_III 147 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00618 Cme-Chr9:6539075 Cme09g00630 Cme-Chr9:6715988 3.50E-73 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00618 K03231 - csv:101220517 325.479