Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00647 ATGACCAATCAGATGAGGAGTAGTGTAAACCGAAGGCGAGACTTCACAGTCAACTATAAGTGGAAGAAGAAAAGGATAATCCAGTCAGTTGAAGAGGAGGTTGAATCAAAGTTTGGATTCAATCTCTTCTCTGAAGGCGACAAGAGGCTGGGATGGTTGCTCACTTTCACTCCTGATGGCGGCAGTTTCAAATCAAAATATAAGTTTTGTCCTTATTTTTATGCAGCCACAAAAAAAAAAATGGAAACTGATGTGGAGGCTTATTTGAGACAAGGTTATAAAGGTCAAATAGCTGATATTGAGATTTTAGAAAAAGAAGACCTTGATCTTAGGCCTCAAGATTTTCTAGAATGTATTGTTGATCTTCGAGAGTACGACGTTCCTTACCACGTTCGCTTTGCAATCGATCATGATTTGCGCTGTGGACAGTGGTACGATGTGAGTGTATCGAGCACTGGTATTACTCTTGAGAAGAGAAAAGATCTTCTACAACGTGCTGAAGTTCGGATATGTGCATTCGATATTGAGACAACAAAACTACCATTGAAATTTCCAGATGCTGAATATGACATGATAATGATGATCTCCTATATGTTTGATGGACAAGGGCACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAATACACTCCAAAACCAGAATATGAAGGGTTCTTCAAAGTGAACAATGTGAAAAATGAGTTAGAGCTTCTCAGACTGTGGTTTGGCCATATGCGAGAGGTGAAGCCTGGTATCTACGTCACCTATAATGGCGACTATTTTGACTGGCCATTCCTTGAAAGCAGAGCAGCATATCATGGACTTAAAATGAGTTGTGAAGTAGGATTTCAATGTGACAAGAATCTGGGAGAATGTCGTTCAAAATTTGCTTGTCATTTGGATTGCATTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAGGGTAGCCATGGTTTGAAGGTAATCCTGATTAATGATGCTATGTCATATGAGTTGGGGAACATTACTTTCCCGGAAAGGGCTGTCACAAAAGTGAAATTGGGGTACAATCCTCTTGAAGTTAATCCAGAGGATATGGTTCGGTTTGCAAAGGAAAAGCCTCAGATGATGGCTTCCTATTCCGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTTATCCTTTCATTTTTTCGCTAGCAACTATCATTCCTATGTCACCCGATGAAGTGTTGCGCAAGGGAAGTGGAACGCTTTGCGAAATGCTTTTAATGGTTCAGGCTTTCAAGGCTAATGTCGTGTGTCCTAACAAACATCAATCGGGTGCAGAAAAGTTTCATCACAATCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGCCTAGAGAGTGGTGTATTTAGATCTGACCTACCAACCAGTTTTAGACTTGATTCATCTGGTTATGATGTATGCCTTATTCATGCATCTCAAGCAAATTCCCCTGATCATCAATTGATAAACAATCTAGATCGAGACTTGCAGTATGCCATTCAAGTAGAAGGAAAGATGGACTTAGAATCAGTGTTGAACTATAGTGACGTGAAGAATGCTATTATGGAAAAGCTTATTCGATTGCGGGATGAGCCTATGCGTGAAGAGTGCCCTCTAATCTATCATTTTGATGTAGCTGCAATGTATCCTAACATCACTTTAACAAATATGCTTCAGATGATTAAAGTGGTTTCATCCAAGGTTGAAAGAATATACAACCCTTACTGGAATAATTTTCGAGATAGAAGATATGAATACAAAGGGCTCAATAAAGTTTGGAAGGGGAAACTATCAGAAGCTAAAGCAAGTGGAAATTCAATCAAGATCCAAGAAGCCCAAGACATGGTGGTTCTGTATGATTCATTACAACTTGCTCATAAATGTATCCTTAACTCCTTTTATGGATATGTGACGCGAAAGGGTGCTCGTTGGTATTCAATGGAAATGGCTGGGGTTGTTACATATACTGGAGCAAAGATCATTCAGAATGCTCGTCTGCTAATTGAGAAAATTGGAAAACCGCTAGAGTTAGACACTGATGGTATTTGGTGTGCACTACCGGGATCATTCCCAGAGAGCTTTACCTTTAAAACAAAAGATTCAAACAAGTTGACGATTTCATATCCATGTGTTATGCTTAATGTTGATGTAGCAAGGAACAATACAAATGACCAGTACCAGACACTTGTAGATCCTGTGAGGAAAATATATGAAACGCGCAGTGAATGCTCAATTGAATTTGAAGTGGATGGACCATACAAGAGATATGCTGTCTTCAATGATGATGGAACTCTTGCAGAACTAAAAGGCTTTGAGATCAAACGGAGGGGGGAGTTAAAGCTCAGCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTTCATGGTTCCACCTTAGAGGAATGTTATTCAGTTGTTGCATCTGTTGCAAATCGCTGGCTTGATCTTCTAGATAGTCAAGGAAACAACATTGTTGATAGTGAGTTGCTTGATTATATATCTGAATCCAGTACCATGAGCAAGTCTTTGGCAGACTATGGAGAGCAAAAGTCTTGTGCTGTTACCACTGCAAAACGTCTTGCTGATTTTCTTGGTGATACAATGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTTGCTATATTTGAGACTGATCCAGAGATAATGAAATTCTATGTACGCAAATGGTGTAAAATTTCTTTGGAAGTTGGCATTCGATCTATCATTGACTGGTCCTACTACAAACAACGCCTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCTGCCATGCAGAAGGTTTCAAATCCTGTCCCTAGGGTGGTCCATCCTGATTGGTTGCATAAAAAAGTTCGGGAAAAGGATGATAAATTTTGCCAGCAGAAGCTATTTGATATGTTTGCCTCGTCAAGCAGATGTAAGTATTCAGAAAACAATGGTGGTGCTAGCAGCAGCAAACATGTGATGAACGGAAAAAATTCTTATGATATTGGAGACTTTCAAAAGAAAGCTAGTTCTACAAATGGCTCCAAACCGGTTGTTCGAAGCTACGACATTAGAGCCCTGAAACATTCAGTTACAAAAGATAGCCAAGTAGATTCCATGATGCACAAAAAGTTTAAGGGTGTTGGATGTGATCCTTCTTCACCATTTCATTTCAAAGACGTTGATAGAAATGTGGATTACCATGGATGGCTTGAAATGAAGAAACGAAAGTGGAAGAGTAATTTGGACAAGAGGAAGAAACAAAGATCGGTAGATTTCTGGACTCCACTTCCTGCTACTGATGTTTCACGGGAGTTAAATTGCGCTGTGAATGATAAAGAGGCTCCCGGAATAACAGGCGTTGGCTCGTATTTCAAGAGGCAAGAAAAATCTATAACACACTGCCATTGGCAGCTTGTTCATAGTTCACAGAGTGGCCAATATTTTGCTTGGGCTGTTGTTGAAGGAGTTATGCTAAAGATTCCTGTTATTATCCCTAGAGTATTTTACATTAATTCTAAAGTACCCATTACTGAAGAATTTGTCGGTAGGCGTGTTAACAAGACTCTTCCCCATGGCAGGCACATCTATAACCTTTATGAGGTTGTAACTGATGAAGGTCAATTTAGGACACAGAGTAATAAACTTGCTGCCCTCTTTGCAGAACCAGAAGTTGAGATTCTGACGATGTTCTTGGATCAGGGCATCTATGAAAGCAAGATACCTTTGGAGTTCAAGTCCATCCTCCAGATTGGTTGTGTCTGTAAAGTCAAGAAAACTGCTAAAAGCTGGAACATTCAAGACGGGTGGAGTCTGGATGAACTGCAAATGAAGACTACAACAGAATGCAGTTATCTGGAAAAGCTAATTCCTTTCATCTAT 3915 39.8 MTNQMRSSVNRRRDFTVNYKWKKKRIIQSVEEEVESKFGFNLFSEGDKRLGWLLTFTPDGGSFKSKYKFCPYFYAATKKKMETDVEAYLRQGYKGQIADIEILEKEDLDLRPQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTGITLEKRKDLLQRAEVRICAFDIETTKLPLKFPDAEYDMIMMISYMFDGQGHLIINRECVGEDIENLEYTPKPEYEGFFKVNNVKNELELLRLWFGHMREVKPGIYVTYNGDYFDWPFLESRAAYHGLKMSCEVGFQCDKNLGECRSKFACHLDCIAWVKRDSYLPQGSHGLKVILINDAMSYELGNITFPERAVTKVKLGYNPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVYPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAFKANVVCPNKHQSGAEKFHHNRLLESETYIGGHVECLESGVFRSDLPTSFRLDSSGYDVCLIHASQANSPDHQLINNLDRDLQYAIQVEGKMDLESVLNYSDVKNAIMEKLIRLRDEPMREECPLIYHFDVAAMYPNITLTNMLQMIKVVSSKVERIYNPYWNNFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVTRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPESFTFKTKDSNKLTISYPCVMLNVDVARNNTNDQYQTLVDPVRKIYETRSECSIEFEVDGPYKRYAVFNDDGTLAELKGFEIKRRGELKLSKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDSQGNNIVDSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMGTPVSERAVPVAIFETDPEIMKFYVRKWCKISLEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLHKKVREKDDKFCQQKLFDMFASSSRCKYSENNGGASSSKHVMNGKNSYDIGDFQKKASSTNGSKPVVRSYDIRALKHSVTKDSQVDSMMHKKFKGVGCDPSSPFHFKDVDRNVDYHGWLEMKKRKWKSNLDKRKKQRSVDFWTPLPATDVSRELNCAVNDKEAPGITGVGSYFKRQEKSITHCHWQLVHSSQSGQYFAWAVVEGVMLKIPVIIPRVFYINSKVPITEEFVGRRVNKTLPHGRHIYNLYEVVTDEGQFRTQSNKLAALFAEPEVEILTMFLDQGIYESKIPLEFKSILQIGCVCKVKKTAKSWNIQDGWSLDELQMKTTTECSYLEKLIPFIY 1305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6984608 6997223 - MELO3C002892.2.1 Cme09g00647 337507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00647 1305 SUPERFAMILY Ribonuclease H-like 55 414 IPR012337 -
Cme09g00647 1305 Pfam DNA polymerase family B, exonuclease domain 116 325 IPR006133 -
Cme09g00647 1305 SUPERFAMILY DNA/RNA polymerases 416 942 IPR043502 -
Cme09g00647 1305 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 35 581 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Cme09g00647 1305 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 592 1304 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Cme09g00647 1305 SMART polmehr3 166 703 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cme09g00647 1305 Pfam DNA polymerase family B 609 877 IPR006134 GO:0000166|GO:0003677
Cme09g00647 1305 CDD DNA_polB_epsilon_exo 167 391 - -
Cme09g00647 1305 Gene3D Palm domain of DNA polymerase 532 675 IPR023211 -
Cme09g00647 1305 Gene3D - 165 415 IPR036397 GO:0003676
Cme09g00647 1305 Gene3D - 768 894 IPR042087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00647 Cme-Chr9:6984608 Cme11g01900 Cme-Chr11:27128793 2.29E-34 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00647 K02324 - csv:101208568 1173.3