Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00668 ATGTCCATCTCTTCTTCCTCCGACTGCTTCTTCGACTCTCACTTACTCTGTGATGAAGACTCCTCCGGTATTTTGTCCGGAGACTTGCTGGAGTACTCCTCTGACCTTGAATCGGCGGCCAGCAGTGAGGACTCTATCGCCAGTTTCATAGAGGACGAGAGGCACTTTGTTCCTGGAATTGATTACTTATCGCGCTTTCAGTCTCAATCGCTCGATTCCTCCGCAAGAGCCGATTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCACTCACTGCATACCTTTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGAAACAAATGGGTGGCCATTGCAGCTTCTTTCAGTGGCTTGTTTATCACTTGCAGCTAAAATGGAGGAACCCATTGTTCCTTCATTCGTGGATCTGCAGATTGAAGGAGCAAAATATATATTTGAACCTAGAACAATAAGTAGGATGGAGCTACTTGTGCTGACAACTTTGAATTGGCGGCTCCGATCCGTTACACCATTCAGCTTTATCGGATTCTTCTCTTACAAAGTTGATCCCACAGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACGGAAATTATTCTCTCCAATATTCGAGACGCTACTTTTCTTGAGTACTGGCCTTCCTGCATTGCTGCCGCTGCTTTACTTTGTGCGGCAAATGAAATTCCCAATTTGACCCTCTTGAATCCTGAACATGCCCAGTCTTGGTGCAATGGACTCAGCAAAGATAAAATAGTTGGGTGCTATCGGTTGATGCAACCGTTGACATTGGAGAGTCGTCGGAGGAAAGCACCGAAAGTGATACCGCAGCTCCGAGTGAGAGTCCGAGCTGGGTTGAGATACAGTGACTCGTCATCCTCTTCGTCCTCATCAAGGTTACCTTTTAAAAGGAGGAAGTTAAATAATTGCGTGTGGGTAGAAGATGACAAAGAAAATTCCAAGTTTAGAGCAGACGAATAA 1008 45.63 MSISSSSDCFFDSHLLCDEDSSGILSGDLLEYSSDLESAASSEDSIASFIEDERHFVPGIDYLSRFQSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPIVPSFVDLQIEGAKYIFEPRTISRMELLVLTTLNWRLRSVTPFSFIGFFSYKVDPTGTFSSFLNSRSTEIILSNIRDATFLEYWPSCIAAAALLCAANEIPNLTLLNPEHAQSWCNGLSKDKIVGCYRLMQPLTLESRRRKAPKVIPQLRVRVRAGLRYSDSSSSSSSSRLPFKRRKLNNCVWVEDDKENSKFRADE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7328331 7331783 - MELO3C002910.2.1 Cme09g00668 337528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00668 335 SMART Cyclin_C_2 178 311 IPR004367 -
Cme09g00668 335 CDD CYCLIN 76 168 IPR013763 -
Cme09g00668 335 Gene3D - 48 239 - -
Cme09g00668 335 PANTHER CYCLINS 24 318 IPR039361 -
Cme09g00668 335 SMART cyclin_7 81 169 IPR013763 -
Cme09g00668 335 ProSitePatterns Cyclins signature. 76 107 IPR006671 -
Cme09g00668 335 Gene3D - 59 176 - -
Cme09g00668 335 PANTHER CYCLIN-D1-1 24 318 - -
Cme09g00668 335 Pfam Cyclin, N-terminal domain 46 175 IPR006671 -
Cme09g00668 335 SUPERFAMILY Cyclin-like 160 282 IPR036915 -
Cme09g00668 335 Pfam Cyclin, C-terminal domain 178 282 IPR004367 -
Cme09g00668 335 SUPERFAMILY Cyclin-like 40 175 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g02202 Cme-Chr7:26268922 Cme09g00668 Cme-Chr9:7328331 2.25E-60 dispersed
Cme08g02423 Cme-Chr8:31082423 Cme09g00668 Cme-Chr9:7328331 1.71E-23 dispersed
Cme09g00668 Cme-Chr9:7328331 Cme10g00495 Cme-Chr10:3184437 3.69E-140 dispersed
Cme09g00668 Cme-Chr9:7328331 Cme08g00737 Cme-Chr8:4915013 1.20E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00668 K18810 - csv:101210686 600.512