Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00691 ATGGGGCACCAATTTCCATTCATACCCTTCTCCCTCATCTTCTTCCTTTTCGCTCTTCCTCATCAATTTGTTCACTGCAAAACCTTGAAACGCGATGTGAAAGCTTTGACTGAAATCAAAGCCTCTCTCGGCTGGAGAGTGGTGTATTCCTGGGTAGGAGATGATCCATGTGGTGGTTCTCACCTTCCACCTTGGTCCGGCGTTACCTGTTCCACCCAAGGAGACTACAGAGTCGTCACTGAATTAGAAGTCTATGCGGTTTCTATTGTTGGACCCTTTCCTGTTGCGGTTACCAATCTCTTGGACCTTACTAGGCTGGATCTTCATAATAACAAGTTGACTGGACCAATTCCTCCTCAAATTGGACGGTTAAGACGTCTCAAAATACTGAATTTAAGGTGGAATAAACTTCAAGATGTCATCCCTCCTGAGATTGGTGCACTAAAGAGCCTAACTCATTTAAATTTGGGTTTCAATAATTTCAAAGGAGAAATCCCCAAAGAACTTATTAATCTTCGTGAGCTCCGCTATCTCCATTTAAACGAAAATCGCCTTTCAGGGAAAATTCCTCCTGAACTGGGCACTCTACCCAATCTTCGTCACCTGGATCTTGGCAACAACCATTTAGTAGGAACCATAAGGGAACTGATTCGCCTTGAGGGCTGTTTTCCATCACTCCGCAACCTGTACATCAACAATAATTACTTTACTGGAGGAGTTCCATCACAGCTTGCGAACCTCACTAACTTGGAAATTCTGTACCTCTCCTACAACAAGATGTCTGGGATAATACCACCTGGCGTTGCTCATATACCTAAGTTAACTTATCTGTACTTGGATCACAACCAATTTAGTGGAAGAATCCCTGATGCCTTCTATAAACACCCATTCTTAAAAGAGATGTACATTGAAGGAAATGCATTTCGGCAAGGTGTCAAGCCAATAGGTTTCCACAAGGTTCTTGAAGTTTCTGATTCTGAATTCCTTGTTTAA 993 42.7 MGHQFPFIPFSLIFFLFALPHQFVHCKTLKRDVKALTEIKASLGWRVVYSWVGDDPCGGSHLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPVAVTNLLDLTRLDLHNNKLTGPIPPQIGRLRRLKILNLRWNKLQDVIPPEIGALKSLTHLNLGFNNFKGEIPKELINLRELRYLHLNENRLSGKIPPELGTLPNLRHLDLGNNHLVGTIRELIRLEGCFPSLRNLYINNNYFTGGVPSQLANLTNLEILYLSYNKMSGIIPPGVAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRQGVKPIGFHKVLEVSDSEFLV 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7824311 7827938 + MELO3C002928.2.1 Cme09g00691 337551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00691 330 SUPERFAMILY L domain-like 62 311 - -
Cme09g00691 330 ProSiteProfiles Leucine-rich repeat profile. 198 220 IPR001611 GO:0005515
Cme09g00691 330 Pfam Leucine Rich repeats (2 copies) 174 216 IPR025875 -
Cme09g00691 330 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 10 329 - -
Cme09g00691 330 SMART LRR_typ_2 271 295 IPR003591 -
Cme09g00691 330 SMART LRR_typ_2 172 194 IPR003591 -
Cme09g00691 330 SMART LRR_typ_2 124 148 IPR003591 -
Cme09g00691 330 SMART LRR_typ_2 196 219 IPR003591 -
Cme09g00691 330 SMART LRR_typ_2 100 123 IPR003591 -
Cme09g00691 330 SMART LRR_typ_2 247 270 IPR003591 -
Cme09g00691 330 Pfam Leucine rich repeat 103 161 IPR001611 GO:0005515
Cme09g00691 330 Pfam Leucine rich repeat 224 284 IPR001611 GO:0005515
Cme09g00691 330 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Cme09g00691 330 Gene3D Ribonuclease Inhibitor 26 218 IPR032675 -
Cme09g00691 330 Gene3D Ribonuclease Inhibitor 219 328 IPR032675 -
Cme09g00691 330 PRINTS Leucine-rich repeat signature 103 116 - -
Cme09g00691 330 PRINTS Leucine-rich repeat signature 196 209 - -
Cme09g00691 330 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 10 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00691 Cme-Chr9:7824311 Cme10g00370 Cme-Chr10:2370251 8.26E-151 dispersed
Cme09g00691 Cme-Chr9:7824311 Cme08g02076 Cme-Chr8:26158878 1.26E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00691 - - csv:101208963 644.039