Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00694 ATGGATATGGAAATTGATGCTTCCAAAGATGTTCGTTTGATCAATGACGATGATCTTTTCAAAGCCGCAGAGACCGGCGATTCTTCCGTTTTCACTGCCCTCACACCACATCAGCTTTCTCAATCTCTCTCCCTAAGAAATGAGGATGATCGCTCTCTTCTCCACGTTGCCGTCTCTTCAGGCCACGCCGATGTTGTAAAGATACTGGTTACTGCTGATCAGTCTACAAAGGTAATTAACTGCGCCGATGAGGAAGGTTGGGCACCGATTCATTCTGCTGCTAGCATTGGGCGGTCTGACATTTTAGATACCTTGTTGAGCGGAGGAGCCGATGTAAATTTGAAAAATGATGGTGGTCGCACTGCTCTTCATTATGCTTCAAGTAAAGGATGGTTGAAGATTGCTGAAACTCTTATCTCACATGGTGCCAAAATTAATTCAAAAGACAAGGTTGGTTGCACACCGTTGCATCGAGCAGCTAGCACTGGAAACTCAGAATTGTGTGAGCTTCTGATTGAGGAAGGAGCAGAAGTTGATGCTACTGATAAAGCTGGCCAAACACCTCTTATGAATGCAGTAATTTGCCAAAACAAAGAGGTTGCTCTTCTTCTAATAAGACATGGAGCTGACGTGGATGTGGAAGATGGGGAAGGTTTCACAGTTCTTGGTAGAGCTTCAATTGAATTTAGGCCAGCACTGATTGATGCTGCCAAAACAATGGTTGAAGGATGA 732 44.4 MDMEIDASKDVRLINDDDLFKAAETGDSSVFTALTPHQLSQSLSLRNEDDRSLLHVAVSSGHADVVKILVTADQSTKVINCADEEGWAPIHSAASIGRSDILDTLLSGGADVNLKNDGGRTALHYASSKGWLKIAETLISHGAKINSKDKVGCTPLHRAASTGNSELCELLIEEGAEVDATDKAGQTPLMNAVICQNKEVALLLIRHGADVDVEDGEGFTVLGRASIEFRPALIDAAKTMVEG 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7878110 7883649 + MELO3C002930.2.1 Cme09g00694 337554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00694 243 ProSiteProfiles Ankyrin repeat region circular profile. 184 215 - -
Cme09g00694 243 SMART ANK_2a 184 213 IPR002110 GO:0005515
Cme09g00694 243 SMART ANK_2a 85 114 IPR002110 GO:0005515
Cme09g00694 243 SMART ANK_2a 151 180 IPR002110 GO:0005515
Cme09g00694 243 SMART ANK_2a 49 81 IPR002110 GO:0005515
Cme09g00694 243 SMART ANK_2a 118 147 IPR002110 GO:0005515
Cme09g00694 243 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 19 122 - -
Cme09g00694 243 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 78 236 - -
Cme09g00694 243 ProSiteProfiles Ankyrin repeat region circular profile. 49 70 - -
Cme09g00694 243 Pfam Ankyrin repeats (3 copies) 118 182 IPR002110 GO:0005515
Cme09g00694 243 Pfam Ankyrin repeats (3 copies) 19 116 IPR002110 GO:0005515
Cme09g00694 243 ProSiteProfiles Ankyrin repeat region circular profile. 151 183 - -
Cme09g00694 243 Pfam Ankyrin repeat 185 212 IPR002110 GO:0005515
Cme09g00694 243 Gene3D - 11 123 IPR036770 -
Cme09g00694 243 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Cme09g00694 243 ProSiteProfiles Ankyrin repeat profile. 49 81 IPR002110 GO:0005515
Cme09g00694 243 ProSiteProfiles Ankyrin repeat region circular profile. 85 117 - -
Cme09g00694 243 Gene3D - 124 242 IPR036770 -
Cme09g00694 243 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
Cme09g00694 243 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Cme09g00694 243 PRINTS Ankyrin repeat signature 152 167 IPR002110 GO:0005515
Cme09g00694 243 PRINTS Ankyrin repeat signature 200 214 IPR002110 GO:0005515
Cme09g00694 243 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Cme09g00694 243 SUPERFAMILY Ankyrin repeat 18 226 IPR036770 -
Cme09g00694 243 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C 19 122 - -
Cme09g00694 243 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C 78 236 - -
Cme09g00694 243 ProSiteProfiles Ankyrin repeat region circular profile. 118 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00867 Cme-Chr6:5938909 Cme09g00694 Cme-Chr9:7878110 2.53E-06 dispersed
Cme09g00338 Cme-Chr9:2886780 Cme09g00694 Cme-Chr9:7878110 1.74E-13 dispersed
Cme09g00694 Cme-Chr9:7878110 Cme09g00898 Cme-Chr9:12374775 2.81E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00694 K06694 - csv:101208718 459.914