Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00694 ATGGATATGGAAATTGATGCTTCCAAAGATGTTCGTTTGATCAATGACGATGATCTTTTCAAAGCCGCAGAGACCGGCGATTCTTCCGTTTTCACTGCCCTCACACCACATCAGCTTTCTCAATCTCTCTCCCTAAGAAATGAGGATGATCGCTCTCTTCTCCACGTTGCCGTCTCTTCAGGCCACGCCGATGTTGTAAAGATACTGGTTACTGCTGATCAGTCTACAAAGGTAATTAACTGCGCCGATGAGGAAGGTTGGGCACCGATTCATTCTGCTGCTAGCATTGGGCGGTCTGACATTTTAGATACCTTGTTGAGCGGAGGAGCCGATGTAAATTTGAAAAATGATGGTGGTCGCACTGCTCTTCATTATGCTTCAAGTAAAGGATGGTTGAAGATTGCTGAAACTCTTATCTCACATGGTGCCAAAATTAATTCAAAAGACAAGGTTGGTTGCACACCGTTGCATCGAGCAGCTAGCACTGGAAACTCAGAATTGTGTGAGCTTCTGATTGAGGAAGGAGCAGAAGTTGATGCTACTGATAAAGCTGGCCAAACACCTCTTATGAATGCAGTAATTTGCCAAAACAAAGAGGTTGCTCTTCTTCTAATAAGACATGGAGCTGACGTGGATGTGGAAGATGGGGAAGGTTTCACAGTTCTTGGTAGAGCTTCAATTGAATTTAGGCCAGCACTGATTGATGCTGCCAAAACAATGGTTGAAGGATGA 732 44.4 MDMEIDASKDVRLINDDDLFKAAETGDSSVFTALTPHQLSQSLSLRNEDDRSLLHVAVSSGHADVVKILVTADQSTKVINCADEEGWAPIHSAASIGRSDILDTLLSGGADVNLKNDGGRTALHYASSKGWLKIAETLISHGAKINSKDKVGCTPLHRAASTGNSELCELLIEEGAEVDATDKAGQTPLMNAVICQNKEVALLLIRHGADVDVEDGEGFTVLGRASIEFRPALIDAAKTMVEG 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7878110 7883649 + MELO3C002930.2.1 Cme09g00694 337554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00694 243 ProSiteProfiles Ankyrin repeat region circular profile. 184 215 - -
Cme09g00694 243 SMART ANK_2a 184 213 IPR002110 GO:0005515
Cme09g00694 243 SMART ANK_2a 85 114 IPR002110 GO:0005515
Cme09g00694 243 SMART ANK_2a 151 180 IPR002110 GO:0005515
Cme09g00694 243 SMART ANK_2a 49 81 IPR002110 GO:0005515
Cme09g00694 243 SMART ANK_2a 118 147 IPR002110 GO:0005515
Cme09g00694 243 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 19 122 - -
Cme09g00694 243 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 78 236 - -
Cme09g00694 243 ProSiteProfiles Ankyrin repeat region circular profile. 49 70 - -
Cme09g00694 243 Pfam Ankyrin repeats (3 copies) 118 182 IPR002110 GO:0005515
Cme09g00694 243 Pfam Ankyrin repeats (3 copies) 19 116 IPR002110 GO:0005515
Cme09g00694 243 ProSiteProfiles Ankyrin repeat region circular profile. 151 183 - -
Cme09g00694 243 Pfam Ankyrin repeat 185 212 IPR002110 GO:0005515
Cme09g00694 243 Gene3D - 11 123 IPR036770 -
Cme09g00694 243 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Cme09g00694 243 ProSiteProfiles Ankyrin repeat profile. 49 81 IPR002110 GO:0005515
Cme09g00694 243 ProSiteProfiles Ankyrin repeat region circular profile. 85 117 - -
Cme09g00694 243 Gene3D - 124 242 IPR036770 -
Cme09g00694 243 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
Cme09g00694 243 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Cme09g00694 243 PRINTS Ankyrin repeat signature 152 167 IPR002110 GO:0005515
Cme09g00694 243 PRINTS Ankyrin repeat signature 200 214 IPR002110 GO:0005515
Cme09g00694 243 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Cme09g00694 243 SUPERFAMILY Ankyrin repeat 18 226 IPR036770 -
Cme09g00694 243 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C 19 122 - -
Cme09g00694 243 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C 78 236 - -
Cme09g00694 243 ProSiteProfiles Ankyrin repeat region circular profile. 118 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00694 K06694 PSMD10; 26S proteasome non-ATPase regulatory subunit 10 - csv:101208718 459.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00867 Cme-Chr6:5938909 Cme09g00694 Cme-Chr9:7878110 2.53E-06 dispersed
Cme09g00338 Cme-Chr9:2886780 Cme09g00694 Cme-Chr9:7878110 1.74E-13 dispersed
Cme09g00694 Cme-Chr9:7878110 Cme09g00898 Cme-Chr9:12374775 2.81E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g7 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g00694
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009040 2 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g00694 Cme_Chr09 FPKM 27.361158 29.175634 13.955398 13.275544 9.88107 10.116884 9.921833 16.689156 16.133604 14.61341