Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00738 ATGGCGGCCAACCCCAACTCCGTTTCCTTCAAGGTTCCCTACAGGAACCTCCACGATGCAGAAGTGGAGATGGTGGCTGTCGATGAACACCAGCTTCATGGGATCGATCTCAATTCTCCTTCTTCTGATGGATGTCCCAATGGAAGCCAAACTGAACACAGTTTTTCCTCTTCGCCCCATCTTAGATCTAAGCCCAATAGTTTGACTATCTTAATTCTCAGTTGTACTATCGCTGCCGGTGTTCAATTTGGTTGGGCATTACAGCTTTCCCTTCTAACTCCCTATATTCAGACGCTTGGAATTGAGCATGCATTTTCTTCCTTTATTTGGCTATGTGGTCCCATCACTGGGCTCGTGGTTCAACCATGTGTCGGTATATGGAGTGATAAGTGTTCTTCAAAATATGGAAGGAGGCGTCCCTTTATTCTTGCTGGGTCCTTAATGATAGCAGTTGCTGTGGTGTTGATTGGATTTTCTGCTGACATTGGATATATACTAGGAGATACAAAGGAGCATTGCAGAGTATATAAGGGTACACGAACAAGGGCAGCTATTATCTTTGTAATAGGCTTTTGGATGCTTGATCTTGCAAACAATACGGTGCAGGGTCCTGCTCGTGCTCTTCTAGCTGATTTATCAGGTCCTGATCAACACAATGTTGCAAATGCGGTATTTTGTTCGTGGATGGCTGTTGGTAACATTCTAGGTTTTTCAGCAGGAGCTAGTGGAAATTGGCACAAATGGTTTCCTTTCCTTTTAAGTAATGCTTGCTGTGAAGCCTGTGGAAACCTTAAAGCTGCATTTCTTATTGCTGTGCTTTTTCTAACCATATGTACTCTTGTTACAATATATTTTGCCGATGAAGTTCCACTTACTGCTGTAGATCAACCACCACGCTTATCAGATTCTGCTCCCCTGTTGAATGGGAATGAACAAAATAGTCTTGATATTTTAAAACCAGAACTTAATGGCCTGAATGGGAGCAATGTTGACTATGGCCATCGTGAAAATAGTAATTTGAAAAATTCAAAAGCAGAAAGTGAGGAAAATCACAACGAAGGTTATTATGATGGTCCTGCAACAGTATTAGTTAAATTGTTGACCAGTTTAAGACATTTACCACCTGCCATGCATTCAGTGCTTCTTGTGATGGCTCTTAGCTGGTTATCTTGGTTTCCCTTCTTCTTATTTGACACGGATTGGATGGGAAGGGAAGTGTATCATGGGGACCCAAAGGGCAGTTTGACTGACGAACGGGTTTATGATCAGGGTGTCAGAGAAGGCGCATTTGGTTTGCTATTGAATTCTGTTGTTCTTGGTATCAGTTCTTTCTTTATAGAGCCCATGTGTCAGCGCATGGGAGCAAGGCTTGTCTGGGCAATGAGCAACTTTATTGTGTTTGCATGCATGGCGGGAACTACTATTATCAGTTTAATATCCGTCAGTCATTACTCTGAAGGAATTGAACATATTATTGGGGGAAACTCAACAATAAAAAATGCTGCCTTGGCTGTTTTTGCACTTCTTGGTTTTCCTCTTGCTATAACATATAGTGTACCCTTCTCTTTGACGGCAGAATTGACTGCTGATTCTGGTGGAGGCCAAGGATTGGCTATAGGAGTTCTCAATCTTGCTGTTGTTATTCCCCAGATGATTGTATCCCTGGGAGCTGGGCCATGGGATGCATTATTCAGTGGAGGAAACATTCCTGCATTTGCTTTGGCCTCTATATGTGCTCTTGCGGCTGGAGTCGTTGCAGTTCTTAGATTGCCTAATCAAACAAACAGTTCTTTCAAATCCACGGGTTTTCATTTTGGTTAA 1821 42.56 MAANPNSVSFKVPYRNLHDAEVEMVAVDEHQLHGIDLNSPSSDGCPNGSQTEHSFSSSPHLRSKPNSLTILILSCTIAAGVQFGWALQLSLLTPYIQTLGIEHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMIAVAVVLIGFSADIGYILGDTKEHCRVYKGTRTRAAIIFVIGFWMLDLANNTVQGPARALLADLSGPDQHNVANAVFCSWMAVGNILGFSAGASGNWHKWFPFLLSNACCEACGNLKAAFLIAVLFLTICTLVTIYFADEVPLTAVDQPPRLSDSAPLLNGNEQNSLDILKPELNGLNGSNVDYGHRENSNLKNSKAESEENHNEGYYDGPATVLVKLLTSLRHLPPAMHSVLLVMALSWLSWFPFFLFDTDWMGREVYHGDPKGSLTDERVYDQGVREGAFGLLLNSVVLGISSFFIEPMCQRMGARLVWAMSNFIVFACMAGTTIISLISVSHYSEGIEHIIGGNSTIKNAALAVFALLGFPLAITYSVPFSLTAELTADSGGGQGLAIGVLNLAVVIPQMIVSLGAGPWDALFSGGNIPAFALASICALAAGVVAVLRLPNQTNSSFKSTGFHFG 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8711282 8716607 - MELO3C002966.2.1 Cme09g00738 337598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00738 606 Gene3D MFS general substrate transporter like domains 64 590 IPR036259 -
Cme09g00738 606 SUPERFAMILY MFS general substrate transporter 56 592 IPR036259 -
Cme09g00738 606 MobiDBLite consensus disorder prediction 38 62 - -
Cme09g00738 606 CDD MFS_SLC45_SUC 71 588 - -
Cme09g00738 606 Pfam MFS/sugar transport protein 85 287 - -
Cme09g00738 606 PANTHER SUCROSE TRANSPORT PROTEIN SUC3 51 606 - -
Cme09g00738 606 PANTHER SUGAR TRANSPORTER 51 606 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00738 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101205348 1167.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01774 Cme-Chr3:26210062 Cme09g00738 Cme-Chr9:8711282 1.85E-124 dispersed
Cme05g00917 Cme-Chr5:12466837 Cme09g00738 Cme-Chr9:8711282 1.28E-16 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01774 . 28 437 Sucrose Transporter Gene Family AT1G22710 50.2 5.6e-117 418.3
Cme05g00917 . 2 349 Sucrose Transporter Gene Family AT1G22710 57.6 1.0e-113 407.5
Cme03g01774 . 21 437 Sucrose Transporter Gene Family AT2G14670 50.5 7.1e-117 417.9
Cme05g00917 . 2 334 Sucrose Transporter Gene Family AT2G14670 58.8 8.4e-110 394.4
Cme03g01774 . 21 420 Sucrose Transporter Gene Family AT1G66570 50.4 3.7e-112 402.1
Cme05g00917 . 2 264 Sucrose Transporter Gene Family AT1G66570 55.1 1.8e-82 303.5
Cme09g00738 . 154 606 Sucrose Transporter Gene Family AT2G02860 70.9 6.1e-187 650.6
Cme05g00917 . 2 334 Sucrose Transporter Gene Family AT5G06170 55.5 1.0e-99 360.9
Cme05g00917 . 2 334 Sucrose Transporter Gene Family AT5G43610 58.8 2.4e-109 392.9
Cme03g01774 . 14 437 Sucrose Transporter Gene Family AT1G09960 70.6 2.2e-177 619.0
Cme05g00917 . 2 346 Sucrose Transporter Gene Family AT1G71880 57.7 2.8e-108 389.4
Cme05g00917 . 2 349 Sucrose Transporter Gene Family AT1G71890 55.4 5.0e-105 378.6
Cme05g00917 . 2 346 Sucrose Transporter Gene Family AT1G71880 57.7 2.8e-108 389.4
Cme03g01774 . 28 437 Sucrose Transporter Gene Family AT1G22710 50.2 5.6e-117 418.3
Cme05g00917 . 2 349 Sucrose Transporter Gene Family AT1G22710 57.6 1.0e-113 407.5
Cme09g00738 . 154 606 Sucrose Transporter Gene Family AT2G02860 70.9 6.1e-187 650.6
Cme03g01774 . 14 437 Sucrose Transporter Gene Family AT1G09960 70.6 2.2e-177 619.0
Cme05g00917 . 2 349 Sucrose Transporter Gene Family AT1G71890 55.4 5.0e-105 378.6
Cme05g00917 . 2 334 Sucrose Transporter Gene Family AT5G43610 58.8 2.4e-109 392.9
Cme03g01774 . 21 420 Sucrose Transporter Gene Family AT1G66570 50.4 3.7e-112 402.1
Cme05g00917 . 2 264 Sucrose Transporter Gene Family AT1G66570 55.1 1.8e-82 303.5
Cme03g01774 . 21 437 Sucrose Transporter Gene Family AT2G14670 50.5 7.1e-117 417.9
Cme05g00917 . 2 334 Sucrose Transporter Gene Family AT2G14670 58.8 8.4e-110 394.4
Cme05g00917 . 2 334 Sucrose Transporter Gene Family AT5G06170 55.5 1.0e-99 360.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005106 1 2 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 2 4 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g00738 Cme_Chr09 FPKM 6.521645 3.607127 7.019447 8.185634 0.475026 0.968065 0.502921 0.154563 0.115757 0.0