Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00779 ATGGAAGCAAGCTCTATAGACGAAAGCACCGCCAGTGACTCCACCTCCATTTCTCCCGTCACCCCATTACTCTTCCACTCATCGCCGTCGGCTACGGCGGAAGCAGAATCCCGTAAACTTCCATCTTCCCGTTTCAAAGGAGTTGTCCCTCAGCCCAACGGCCGATGGGGTGCTCAGATTTACGAGAAACACCAAAGAGTGTGGCTCGGCACTTTCAACGAAGAAAACGACGCCGCCAAGGCTTACGACATCGCCGCCCTCCGCTTCCGTGGACGCGATGCTGTCACCAACTTCAAACCCTCCCTCAACCACGACCACGACCACGCCCTCGAGGCCGACTTCCTCAACTCCCATTCAAAGTTGGAGATCGTGGACATGCTCCGTAAACATACCTACAATGAGGAGCTCCAACAGAGCAAGCGGCACCAGCGGGGGGCGATGGCAGTTGATTCGGGGTCGTTCCCCCATTACTCGGGGTCGGGGTCGGGGTCGGATTCAAAGAGAGAAGTGCTGTTTGAGAAAACGGTGACGCCAAGTGACGTGGGGAAGTTGAACCGGCTGGTGATTCCGAAGCAACACGCGGAGAAGAATTTCCCTATGGAAGAGGGAGTGGTTTCGGGGAAGGGAATGCTTTTGAATTTTGAGGATATGGGAGGGAAGGTTTGGCGGTTCCGGTACTCGTATTGGAACAGCAGCCAGAGCTATGTGTTGACCAAAGGATGGAGCAGATTCGTCAAAGATAACACTCTCAGAGCTGGAGATGTGGTTCGGTTTCTCCGCTCTACTGGACCAGATAAGCAGCTTTACATTCATGCTAACCCAATCAATGCACCGGGAATTAAACCAGTTCATGTTGTGAAGCTTTTTGGAGTCAATATTTTGCAACTGCCGGTGGGGAAGACAGAAGGGGCATTCTTGGAATTACAACAACCTACCAAGAAGCAAAGAGTAATCAAACCTTTGTAA 966 52.17 MEASSIDESTASDSTSISPVTPLLFHSSPSATAEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEENDAAKAYDIAALRFRGRDAVTNFKPSLNHDHDHALEADFLNSHSKLEIVDMLRKHTYNEELQQSKRHQRGAMAVDSGSFPHYSGSGSGSDSKREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPMEEGVVSGKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNTLRAGDVVRFLRSTGPDKQLYIHANPINAPGIKPVHVVKLFGVNILQLPVGKTEGAFLELQQPTKKQRVIKPL 321
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 9587760 9588938 + MELO3C003002.2.1 Cme09g00779 337639
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00779 321 PANTHER AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 28 300 - -
Cme09g00779 321 ProSiteProfiles AP2/ERF domain profile. 44 99 IPR001471 GO:0003700|GO:0006355
Cme09g00779 321 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Cme09g00779 321 PRINTS Ethylene responsive element binding protein signature 81 101 IPR001471 GO:0003700|GO:0006355
Cme09g00779 321 CDD B3_DNA 171 271 IPR003340 GO:0003677
Cme09g00779 321 Pfam B3 DNA binding domain 172 270 IPR003340 GO:0003677
Cme09g00779 321 MobiDBLite consensus disorder prediction 1 47 - -
Cme09g00779 321 Gene3D AP2/ERF domain 43 100 IPR036955 GO:0003700|GO:0006355
Cme09g00779 321 SMART B3_2 172 274 IPR003340 GO:0003677
Cme09g00779 321 MobiDBLite consensus disorder prediction 1 37 - -
Cme09g00779 321 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 28 300 IPR044800 GO:0003700
Cme09g00779 321 SUPERFAMILY DNA-binding pseudobarrel domain 170 269 IPR015300 -
Cme09g00779 321 Pfam AP2 domain 44 91 IPR001471 GO:0003700|GO:0006355
Cme09g00779 321 ProSiteProfiles B3 DNA-binding domain profile. 172 274 IPR003340 GO:0003677
Cme09g00779 321 SMART rav1_2 44 105 IPR001471 GO:0003700|GO:0006355
Cme09g00779 321 Gene3D - 159 277 IPR015300 -
Cme09g00779 321 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
Cme09g00779 321 SUPERFAMILY DNA-binding domain 43 100 IPR016177 GO:0003677
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00779 Cme-Chr9:9587760 Cme10g00289 Cme-Chr10:1878784 4.76E-135 dispersed
Cme09g00779 Cme-Chr9:9587760 Cme09g01901 Cme-Chr9:23146679 1.99E-40 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41935 PF02362 B3 5.30E-28 CL0405 Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00779 K09287 - csv:101206328 622.468