Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme09g00779 | ATGGAAGCAAGCTCTATAGACGAAAGCACCGCCAGTGACTCCACCTCCATTTCTCCCGTCACCCCATTACTCTTCCACTCATCGCCGTCGGCTACGGCGGAAGCAGAATCCCGTAAACTTCCATCTTCCCGTTTCAAAGGAGTTGTCCCTCAGCCCAACGGCCGATGGGGTGCTCAGATTTACGAGAAACACCAAAGAGTGTGGCTCGGCACTTTCAACGAAGAAAACGACGCCGCCAAGGCTTACGACATCGCCGCCCTCCGCTTCCGTGGACGCGATGCTGTCACCAACTTCAAACCCTCCCTCAACCACGACCACGACCACGCCCTCGAGGCCGACTTCCTCAACTCCCATTCAAAGTTGGAGATCGTGGACATGCTCCGTAAACATACCTACAATGAGGAGCTCCAACAGAGCAAGCGGCACCAGCGGGGGGCGATGGCAGTTGATTCGGGGTCGTTCCCCCATTACTCGGGGTCGGGGTCGGGGTCGGATTCAAAGAGAGAAGTGCTGTTTGAGAAAACGGTGACGCCAAGTGACGTGGGGAAGTTGAACCGGCTGGTGATTCCGAAGCAACACGCGGAGAAGAATTTCCCTATGGAAGAGGGAGTGGTTTCGGGGAAGGGAATGCTTTTGAATTTTGAGGATATGGGAGGGAAGGTTTGGCGGTTCCGGTACTCGTATTGGAACAGCAGCCAGAGCTATGTGTTGACCAAAGGATGGAGCAGATTCGTCAAAGATAACACTCTCAGAGCTGGAGATGTGGTTCGGTTTCTCCGCTCTACTGGACCAGATAAGCAGCTTTACATTCATGCTAACCCAATCAATGCACCGGGAATTAAACCAGTTCATGTTGTGAAGCTTTTTGGAGTCAATATTTTGCAACTGCCGGTGGGGAAGACAGAAGGGGCATTCTTGGAATTACAACAACCTACCAAGAAGCAAAGAGTAATCAAACCTTTGTAA | 966 | 52.17 | MEASSIDESTASDSTSISPVTPLLFHSSPSATAEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEENDAAKAYDIAALRFRGRDAVTNFKPSLNHDHDHALEADFLNSHSKLEIVDMLRKHTYNEELQQSKRHQRGAMAVDSGSFPHYSGSGSGSDSKREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPMEEGVVSGKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNTLRAGDVVRFLRSTGPDKQLYIHANPINAPGIKPVHVVKLFGVNILQLPVGKTEGAFLELQQPTKKQRVIKPL | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 9587760 | 9588938 | + | MELO3C003002.2.1 | Cme09g00779 | 337639 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme09g00779 | 321 | PANTHER | AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 | 28 | 300 | - | - | |
Cme09g00779 | 321 | ProSiteProfiles | AP2/ERF domain profile. | 44 | 99 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g00779 | 321 | PRINTS | Ethylene responsive element binding protein signature | 45 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g00779 | 321 | PRINTS | Ethylene responsive element binding protein signature | 81 | 101 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g00779 | 321 | CDD | B3_DNA | 171 | 271 | IPR003340 | GO:0003677 | |
Cme09g00779 | 321 | Pfam | B3 DNA binding domain | 172 | 270 | IPR003340 | GO:0003677 | |
Cme09g00779 | 321 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Cme09g00779 | 321 | Gene3D | AP2/ERF domain | 43 | 100 | IPR036955 | GO:0003700|GO:0006355 | |
Cme09g00779 | 321 | SMART | B3_2 | 172 | 274 | IPR003340 | GO:0003677 | |
Cme09g00779 | 321 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Cme09g00779 | 321 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 28 | 300 | IPR044800 | GO:0003700 | |
Cme09g00779 | 321 | SUPERFAMILY | DNA-binding pseudobarrel domain | 170 | 269 | IPR015300 | - | |
Cme09g00779 | 321 | Pfam | AP2 domain | 44 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g00779 | 321 | ProSiteProfiles | B3 DNA-binding domain profile. | 172 | 274 | IPR003340 | GO:0003677 | |
Cme09g00779 | 321 | SMART | rav1_2 | 44 | 105 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g00779 | 321 | Gene3D | - | 159 | 277 | IPR015300 | - | |
Cme09g00779 | 321 | CDD | AP2 | 43 | 101 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g00779 | 321 | SUPERFAMILY | DNA-binding domain | 43 | 100 | IPR016177 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme09g00779 | Cme-Chr9:9587760 | Cme10g00289 | Cme-Chr10:1878784 | 4.76E-135 | dispersed | |
Cme09g00779 | Cme-Chr9:9587760 | Cme09g01901 | Cme-Chr9:23146679 | 1.99E-40 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41935 | PF02362 | B3 | 5.30E-28 | CL0405 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme09g00779 | K09287 | - | csv:101206328 | 622.468 |