Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00789 CCCATTATCAATTGTTTATTTATTGCTTTCTTTTTCCATCCACCTCTCCACCCTATCTACTCTATTTCTTTTTTTCTCTCTCTCACTCTCACTCTCACTCTCCCTCTGTGTCTGCTGTGGGTCTGTGTCTGCTGTGGGCTTTTAATTAATAATTCAAATAGAGAGATGCAGCAAAGTAGGAAGTTGAGTTGCATTTCATCAAGTGAGAGCGCATGTTTGGAAGGTGATGAAGAAGGAGAAGAATCCATTTTCCTTTCACTCTCCCCTCCAGGCCAACGTAACTCATTCTCTTCCAAACAACAACAAACCATTTACCCTAATTCTTCTCTTCAAAACCCTAATAATAATAATAATAATCATCATCATGAAAATGGCGCCGCCGTCACCGTCGCAATGCACATTGGCCCTCCTCCGGCCCTCATCTCCTCCGCCCCCTCCGCTGTCCGACCCCTTGACTACTGGATCCCGACGCCTGCCCAAATCCTGGTTGGTCCCACCCAGTTCTCTTGCTCTGTCTGCACTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGACATGGATCAGAGTACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGGCAGCATCATCAATGCTTAGAGTTCCATGCTATTGCTGTGCAGAAGGTTGTAAGAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTTAGGACACTTCAAACACATTACAAGAGAAAGCATGGTGCAAAGCCATTCAGTTGTAGGAAATGTGGGAAGTCATTTGCTGTTAGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGTATTTGTGGCTCTGATTTTAAACATAAAAGATCCCTTAAAGATCATGTTCGTGCCTTTGGAGATGGCCATGCACCTCATACTGTTCAACTTTGTGAAGTTGAAGATGATAATGATGATGATGAATGGGAGTCGGATCATCATCATCATCAACATCTAAATGGATCCCCTCAAACCTGGTCTATTTATCATTAA 1035 43.29 PIINCLFIAFFFHPPLHPIYSISFFLSLTLTLTLPLCLLWVCVCCGLLINNSNREMQQSRKLSCISSSESACLEGDEEGEESIFLSLSPPGQRNSFSSKQQQTIYPNSSLQNPNNNNNNHHHENGAAVTVAMHIGPPPALISSAPSAVRPLDYWIPTPAQILVGPTQFSCSVCTKTFNRYNNMQMHMWGHGSEYRKGPESLRGSKAASSMLRVPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKSFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDNDDDEWESDHHHHQHLNGSPQTWSIYH 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9715712 9716967 + MELO3C003009.2.1 Cme09g00789 337649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00789 344 PANTHER ZINC FINGER PROTEIN WIP6 57 328 - -
Cme09g00789 344 SUPERFAMILY beta-beta-alpha zinc fingers 238 273 IPR036236 -
Cme09g00789 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 273 IPR013087 -
Cme09g00789 344 SMART c2h2final6 216 248 IPR013087 -
Cme09g00789 344 SMART c2h2final6 253 273 IPR013087 -
Cme09g00789 344 SMART c2h2final6 168 190 IPR013087 -
Cme09g00789 344 PANTHER ZINC FINGER PROTEIN WIP2 57 328 IPR043584 GO:0003700|GO:0010468
Cme09g00789 344 Pfam Zinc finger, C2H2 type 168 187 IPR013087 -
Cme09g00789 344 SUPERFAMILY beta-beta-alpha zinc fingers 164 191 IPR036236 -
Cme09g00789 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 195 IPR013087 -
Cme09g00789 344 MobiDBLite consensus disorder prediction 89 122 - -
Cme09g00789 344 MobiDBLite consensus disorder prediction 318 344 - -
Cme09g00789 344 Gene3D Classic Zinc Finger 207 299 - -
Cme09g00789 344 ProSitePatterns Zinc finger C2H2 type domain signature. 170 190 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00789 Cme-Chr9:9715712 Cme12g00615 Cme-Chr12:11101277 5.90E-97 dispersed
Cme09g00789 Cme-Chr9:9715712 Cme04g02208 Cme-Chr4:29302073 1.19E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41936 PF00096 zf-C2H2 0.012 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00789 - - csv:101216722 545.814