Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00814 ATGCACGACTCTGGCCAATCTCTACCGCCACGCGTCATCTACAAGTCTCCGACGACCTATTGTCATCTCCACCACTCGTCTCAGGCTCTGAAGTATCATTTCAGGCTTTGGTTAAAATTGGCTTCACGTTGGACTCTCCAGCTTTTTATATTGTCTGCAAGTCTCTTGCCCACAAAGCAGGCTATACCATTCCGACGTTTTTTTGAAGGTGTTGGCCGAACTGCTCAAGCTAAAAATAGGCATTCAAATGGACAAGGATGCTGGCCTATTAAATATGTGAGATTTATTCTAGATCTTAAGAATGCTGAGAGTAATGCCGAAGTGAAAGGACTGGATATTGATTCTCTCATCGTATCCCACGTTCAGGTGAACCAAGCTCAAAAATTAATAGATCAAATTAATTCTATCAATATGTCGAGTTGGGTTGGGTTGGGGAAGAGTGTGTCATGTCTAAGATATGGGACAGTTTTTGGTGGCTTAAAAGCGAGGAAAAGTGCCTCTGGAATATTTCCTCAAAATATTTGTGGGAACTCCAATATCCATGTTCTATGTAAATCTGTTACAGCTATACTTCAATTACTTGGTTGGACAACAATAGCCATCAGATTACTAGAGGATAGGATCGATGACTGGGAATTTTCATGGCTACAGGGCAACTTTATGAAAATGTCGTTTGATGATAATAAATTTGATGCAATATATGCAATCGAAGCCACTTGTCATGCTCCAGACCCAGTAGGTTCTAATGACATTTCTGAAGTATGGGTTTACAACAATCATTCTTTTGAATTAACTGCTACTTCCTCTCTGTGTCTTCTCCCAAGTGGCCTCCTCAATGTCATGATTGTTTCACAGGATCTTGACCATGGGAATCACCTTTTTTGTCCAACGGAAAGGGCTCTTTCTGCTCAACGCGTCGGCTATGACGTTGGTCTTTCTCGGGTGGACCTCGTGAAGCGTGAAGTTACTATTCATCTTCATCTTCTTTCTTTTTCTCCTCCATTTCGCGTCCCCTTCGTTGTCTTCTGCTGCGTTTTCGTCCAAAATGTCTCTATTCGCAAGCCATCGGTCACCGCCTGA 1080 42.41 MHDSGQSLPPRVIYKSPTTYCHLHHSSQALKYHFRLWLKLASRWTLQLFILSASLLPTKQAIPFRRFFEGVGRTAQAKNRHSNGQGCWPIKYVRFILDLKNAESNAEVKGLDIDSLIVSHVQVNQAQKLIDQINSINMSSWVGLGKSVSCLRYGTVFGGLKARKSASGIFPQNICGNSNIHVLCKSVTAILQLLGWTTIAIRLLEDRIDDWEFSWLQGNFMKMSFDDNKFDAIYAIEATCHAPDPVGSNDISEVWVYNNHSFELTATSSLCLLPSGLLNVMIVSQDLDHGNHLFCPTERALSAQRVGYDVGLSRVDLVKREVTIHLHLLSFSPPFRVPFVVFCCVFVQNVSIRKPSVTA 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10485043 10491251 + MELO3C033871.2.1 Cme09g00814 337674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00814 359 Gene3D Vaccinia Virus protein VP39 197 254 IPR029063 -
Cme09g00814 359 SUPERFAMILY Ribosomal protein L22 57 129 IPR036394 GO:0003735|GO:0005840|GO:0006412
Cme09g00814 359 Gene3D Ribosomal protein L22/L17 29 134 IPR036394 GO:0003735|GO:0005840|GO:0006412
Cme09g00814 359 PANTHER RIBOSOMAL PROTEIN L17A 57 128 - -
Cme09g00814 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 203 246 IPR029063 -
Cme09g00814 359 PANTHER 60S RIBOSOMAL PROTEIN L17 57 128 IPR005721 GO:0003735|GO:0006412|GO:0015934
Cme09g00814 359 Pfam Ribosomal protein L22p/L17e 99 129 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00814 K02880 RP-L17e, RPL17; large subunit ribosomal protein L17e - csv:101211875 123.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00814 Cme-Chr9:10485043 Cme10g00651 Cme-Chr10:4162719 1.88E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g261 Blo01g00485 Blo16g01053 Bda01g02095 . . . . . . . . . . . . . Cpe01g01762 . . . . . . . . . . . . . . Cone13ag0856 Cone19ag0856 . . . . . . . . . . . Bpe02g02285 Bma01g00154 . . . . Cma04g02007 . . . . . Bhi12g01376 . . . . . . . . . . . . . . Csa05g01509 . Cme09g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002240 2 2 1 2 3 1 3 1 1 1 1 1 2 3 2 3 1 4 3 1 2 3 2 2 2 2 2 4 1 3 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g00814 Cme_Chr09 FPKM 4.484076 5.414002 1.806798 1.066757 4.70766 3.076596 4.556122 3.215009 3.342255 3.552501