Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00855 ATGAATCGTCTCCCTCAGTTTTTCTCTCCTAGGAACAAAAGAAAACCCATGGATCCCAGGAAAATCCCTGGGAAACCCAAGCTTGGCCGACTTAATGCGGCCAAGAATATTGATTATGATGCTGCTTCCTCGTCTTCTTCGCTCGAAGATTCTTCTGGGTCTCTTTACACTCGTTCCATGGAAAACCCCGATCCCTCCAGTTTTCGGATTAAAGGGCTTGACGGTGAAGTTGATCTCATATGTCGGACTCTAGGGCTAGCTGGCCCTGACGATTTTGCTATTCCGATGGAGGCTTGGGAGGCTAGAAAGGTTCGTTCATCTTCCGAGCTTCTACCGAGGTCGAGGCTGTATTCTATGGATACCTCCCCGAAGACAGAGGAGATTAGTAAGGATAAGGAAGATAAAGAAATTCAAGATGAATTATGTCGGAGGGTTAAGGATTCAGTTCGAATTAGCGTCGAGCTTTCCAAGACTAAGACCGAATTTGCAGAGTTGAATGAACGCCGGATGGCTACTGCTACTGGATGTAGTTCGAGAAGTGGAATTAATGGTGCCCGGCCTCCTTTACTTAAGCCGCCGCCGTCCATGCGGCTACCAAATTTCGATAATGCTTGCTCTACTTGGGACATTTTGAAAGGTTTTGCTCCATTAGTTGAGGATGAACATCAAGAGGAAGTAGGAGAACGTGTGGAACCTTTAGTTGAAGTAGAAGGAGAAGGAGAAGGAGAAGGAAATACAGTGAGGCCTGTGGAGAACGCATCGCTCATAGGATCTTGGGGTTCCTTCACGACATCGAATGACGATGATTCTTCGAGCAGTACTACGGAGCCTGCAAATATTTCACCCAATATGAGAGGTAATCCCATTATCACATCCTGGGTTTTAGGCAGGCTTCTTGGGCGCGGTTCATTTGGATCAGTGTACGAAGCAATTTCAGAGGATGGGACATTTTTTGCACTCAAAGAAGTTTCACTGCTCGATGAAGACAGTCAGGGAAGACAGAGTATCTATCAACTTCAACAGGAGATAGCTCTTCTAAGTGAGTTTGAGCATGAGAACATAGTTCAGTACTATGGCACACATTCGGATGGGTCAAAACTATATATCTTCCTTGAGCTTGTATCTCAAGGCTCCCTTATGAGTCTATATCAGAGGACAAGCCTTATGGATTCCATTGTTTCTGCCTACACAAGGCAGATTCTATCGGGTTTAAAGTATCTTCACGAGCGAAATGTGATTCACAGGGATATTAAATGTGCTAATATATTGGTGGACGTGAATGGATCTGTGAAGCTTGCAGATTTTGGTTTGGCGAAGGCAACAAAATTGAACGATGTTAAATCTTGTAAGGGGACTGCGTATTGGATGGCACCTGAGGTGGTTAATGGGAAGAGTCAAGGATATGGTCTACCTGCCGATATCTGGAGCCTTGGGTGCACAGTATTGGAAATGTTAACCCGAAAGCTTCCATATTCAGAGTTGGAATCTCATATGCAGGCACTATATAGGATCGGAAAAGGCAAACCGCCTGCAGTTCCCGAGTCTCTCCCAAAAGATGCACAGGATTTCATTCTGCAGTGCCTACAAGTTAATCCGAAGGACCGTCCTACTGCTGCTGATCTTTTAAATCACTCGTTTGTGAAAAGACCAGTCTCCAGTTTATCTGGGTCGGCATCTCCTTATAACAGGCCAGGCAGGAGGATTTAA 1707 45.28 MNRLPQFFSPRNKRKPMDPRKIPGKPKLGRLNAAKNIDYDAASSSSSLEDSSGSLYTRSMENPDPSSFRIKGLDGEVDLICRTLGLAGPDDFAIPMEAWEARKVRSSSELLPRSRLYSMDTSPKTEEISKDKEDKEIQDELCRRVKDSVRISVELSKTKTEFAELNERRMATATGCSSRSGINGARPPLLKPPPSMRLPNFDNACSTWDILKGFAPLVEDEHQEEVGERVEPLVEVEGEGEGEGNTVRPVENASLIGSWGSFTTSNDDDSSSSTTEPANISPNMRGNPIITSWVLGRLLGRGSFGSVYEAISEDGTFFALKEVSLLDEDSQGRQSIYQLQQEIALLSEFEHENIVQYYGTHSDGSKLYIFLELVSQGSLMSLYQRTSLMDSIVSAYTRQILSGLKYLHERNVIHRDIKCANILVDVNGSVKLADFGLAKATKLNDVKSCKGTAYWMAPEVVNGKSQGYGLPADIWSLGCTVLEMLTRKLPYSELESHMQALYRIGKGKPPAVPESLPKDAQDFILQCLQVNPKDRPTAADLLNHSFVKRPVSSLSGSASPYNRPGRRI 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11355542 11361682 - MELO3C022777.2.1 Cme09g00855 337715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00855 568 SMART serkin_6 293 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00855 568 MobiDBLite consensus disorder prediction 258 283 - -
Cme09g00855 568 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Cme09g00855 568 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 25 127 - -
Cme09g00855 568 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 117 557 - -
Cme09g00855 568 MobiDBLite consensus disorder prediction 173 195 - -
Cme09g00855 568 MobiDBLite consensus disorder prediction 1 68 - -
Cme09g00855 568 PRINTS Tyrosine kinase catalytic domain signature 371 384 IPR001245 GO:0004672|GO:0006468
Cme09g00855 568 PRINTS Tyrosine kinase catalytic domain signature 406 424 IPR001245 GO:0004672|GO:0006468
Cme09g00855 568 PRINTS Tyrosine kinase catalytic domain signature 472 494 IPR001245 GO:0004672|GO:0006468
Cme09g00855 568 PRINTS Tyrosine kinase catalytic domain signature 516 538 IPR001245 GO:0004672|GO:0006468
Cme09g00855 568 Gene3D Transferase(Phosphotransferase) domain 1 291 561 - -
Cme09g00855 568 MobiDBLite consensus disorder prediction 38 64 - -
Cme09g00855 568 ProSiteProfiles Protein kinase domain profile. 293 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00855 568 Pfam Protein kinase domain 296 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00855 568 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 117 557 - -
Cme09g00855 568 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 25 127 - -
Cme09g00855 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Cme09g00855 568 SUPERFAMILY Protein kinase-like (PK-like) 291 550 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00551 Cme-Chr8:3459611 Cme09g00855 Cme-Chr9:11355542 3.69E-73 dispersed
Cme09g00855 Cme-Chr9:11355542 Cme09g01564 Cme-Chr9:20609817 1.60E-81 dispersed
Cme09g00855 Cme-Chr9:11355542 Cme03g02003 Cme-Chr3:27752940 6.87E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65151 PF00069 Pkinase 1.40E-69 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00855 K13414 - csv:101218538 1042.34