Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00879 ATGGACTCAAGGGGCCATTCTAATGGGGGAGAACTCGAAGCAAAACAGATGGACATTAGAAGACTTTCGTCTTCACGCAGCAATACTCAATGCATCCATAAGGTGGGGGTTCCACCGAAGCAAAATTTCTTCAAGGAATTTAAAACCAGGTTGAAAGAGACTTTCTTTGCAGATGATCCTCTGCGAACCTTCAAGGACCAATCGAAGTCCCGAAAGCTAGTCCTGGGAATTCAGGCTATCTTCCCTATATTTGAATGGGGGAGGAATTACAATCTAACTAAATTTAGAGGAGATATAGTTGCTGGACTCACTATTGCAAGTCTGTGTATTCCACAGGATATAGGCTATGCAAAACTTGCTAATTTGACTCCCCAGTATGGATTATATTCCAGCTTTGTACCACCACTAGTTTATGCTTTGATGGGTAGCTCAAGAGACATAGCGATTGGACCAGTGGCCGTTGTTTCTCTCTTGCTGGGAACACTGCTTCAAAAGGAGATTGATTACCATACACATCCAGAAGAGTATCTGCGGCTTGCATTTACAGCTACCTTTTTTGCTGGGATCACCCAAGCCACTCTAGGGATACTAAGGTTGGGTTTTCTGATTGACTTTCTATCTCATGCTGCCATTGTGGGTTTTATGGGTGGAGCTGCCATCACTATTGCCCTTCAGCAACTTAAAGGCTTTCTTGGTATTCAAAAATTTACAAAGAAAACAGACATTATCTCTGTAATGCGCTCAGTATTTGAGGCAGCGCATCATGGATGGAACTGGCAGACAATAGTCATTGGAGTATCTTTTCTAAGTTTTCTACTGTTTGCCAAGTATATTGGAAAGAAGAATAAGAACCTCTTTTGGGTGCCTGCAATTGCTCCATTAATATCAGTTATTCTGTCCACCTTCTTTGTTTACATAACCCATGCAGACCAGAAAGGTGTCGCAATCGTGAAACACATAGAGAAAGGAATCAACCCCTTATCCGTGAAGCAAATCTACTTCACAGGTGACAACCTCCTTAAAGGATTCAGGACTGGCACGGTGGCTGGTATGATAGCACTAACGGAAGCCATAGCAATTGGAAGAACATTTCCTACCATGAAGGATTACCAGCTTGATGGTAACAAAGAAATGGTGGCACTAGGAACAATGAATGTTATTGGTTCAATGACTTCCTGCTATGTAGCAACAGGCTCGTTTTCTCGCTCAGCTGTGAATTACATGTCTGGCTGTCAAACTGCAGTCTCAAACATCGTTATGTCCTGTGTTGTATTTCTAACTTTAGAATTCATGACTCCCCTATTCAAATACACTCCAAATGCTATTCTAGCTGTCATCATTATCTCTGCTGTGATCAACTTGATAGACATTCAAGCAGCAATTTTGCTATGGAAGATTGATAAATTTGATTTTGTTGCTTGTTTGGGAGCCTTCTTCGGTGTGATATTTGCAAGTGTTGAGATCGGCCTCCTAATTGCTGTCTCTATATCATTTGCTAAGATACTCTTACAAGTAACCAGGCCACGGGTCTCTGTTCTCGGAAAAATCCCTAGGACTACGGTATATAGGAACACTCAACAGTATCCAGAAGCAACGAGGGTTTCAGGCATTCTCATCGTGAGAGTCGATTCTGCAATTTACTTCTCTAATTCCAATTACATCAGAGAGAGGATATTGAGATGCTTGGCAGATGAGGAAGAACAAACAAAGAAGGCCTATTCACCAAAAACTCAGTTTTTGATCGTTGAGATGTCTCCTGTTACCGACATTGATACTAGTGGAATTCATGCCTTGGAAGAGCTATACAAGAATCTCCGGAAAAGAGACATTCAGCTTGTTTTGGCAAACCCGGGGCCAGTAGTGATTGACAAACTCCACGCATCTGATGTTGCTAATCTAATTGGGGAGGACCATATCTTTCTAACAGTTGCTGAAGCTGTATCATCTTGCTCCCCAAAATTGGTGGAAGAGGCCTAG 1977 42.08 MDSRGHSNGGELEAKQMDIRRLSSSRSNTQCIHKVGVPPKQNFFKEFKTRLKETFFADDPLRTFKDQSKSRKLVLGIQAIFPIFEWGRNYNLTKFRGDIVAGLTIASLCIPQDIGYAKLANLTPQYGLYSSFVPPLVYALMGSSRDIAIGPVAVVSLLLGTLLQKEIDYHTHPEEYLRLAFTATFFAGITQATLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIQKFTKKTDIISVMRSVFEAAHHGWNWQTIVIGVSFLSFLLFAKYIGKKNKNLFWVPAIAPLISVILSTFFVYITHADQKGVAIVKHIEKGINPLSVKQIYFTGDNLLKGFRTGTVAGMIALTEAIAIGRTFPTMKDYQLDGNKEMVALGTMNVIGSMTSCYVATGSFSRSAVNYMSGCQTAVSNIVMSCVVFLTLEFMTPLFKYTPNAILAVIIISAVINLIDIQAAILLWKIDKFDFVACLGAFFGVIFASVEIGLLIAVSISFAKILLQVTRPRVSVLGKIPRTTVYRNTQQYPEATRVSGILIVRVDSAIYFSNSNYIRERILRCLADEEEQTKKAYSPKTQFLIVEMSPVTDIDTSGIHALEELYKNLRKRDIQLVLANPGPVVIDKLHASDVANLIGEDHIFLTVAEAVSSCSPKLVEEA 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11871499 11878514 - MELO3C022799.2.1 Cme09g00879 337739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00879 658 PANTHER SULFATE TRANSPORTER 1.3 17 657 - -
Cme09g00879 658 Gene3D STAS domain 507 653 IPR036513 -
Cme09g00879 658 PANTHER SULFATE TRANSPORTER 17 657 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cme09g00879 658 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271|GO:0008272
Cme09g00879 658 TIGRFAM sulP: sulfate permease 82 646 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cme09g00879 658 ProSiteProfiles STAS domain profile. 527 650 IPR002645 -
Cme09g00879 658 Pfam STAS domain 528 646 IPR002645 -
Cme09g00879 658 SUPERFAMILY SpoIIaa-like 529 651 IPR036513 -
Cme09g00879 658 Pfam Sulfate permease family 95 475 IPR011547 GO:0016021
Cme09g00879 658 CDD STAS_SulP_like_sulfate_transporter 528 643 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00256 Cme-Chr1:1871896 Cme09g00879 Cme-Chr9:11871499 0 dispersed
Cme01g02672 Cme-Chr1:34201307 Cme09g00879 Cme-Chr9:11871499 0 dispersed
Cme07g00923 Cme-Chr7:9689593 Cme09g00879 Cme-Chr9:11871499 0 dispersed
Cme07g01742 Cme-Chr7:22891561 Cme09g00879 Cme-Chr9:11871499 0 dispersed
Cme09g00573 Cme-Chr9:5889574 Cme09g00879 Cme-Chr9:11871499 2.66E-116 dispersed
Cme09g00879 Cme-Chr9:11871499 Cme10g01488 Cme-Chr10:18577803 0 dispersed
Cme09g00879 Cme-Chr9:11871499 Cme09g00880 Cme-Chr9:11955391 1.25E-112 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00879 K17470 - csv:101212138 1221.07