Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00898 ATGGCCGTGAGCGGCGGAAGAGAGAAGGAGGAGGAAGCTGGAAACTACCGGCGGACGGATTCGGATGGAGAAGTGGAATATACGGTGGAGAGCGTTCGTGAACGGATCACATCGTCGAGAGGGAGTCGATTCAATTTGATTCAGACACAATTGAGGATTGACCAGAATCGTAGAAGATTTAGCCGTGAAAATCTCATCAATGGCATTAAGTGCCTCGTTATCCTCCCTGACAGCAGATGGTATCGGGCGTGGACGAAGTTCATACTGATATGGGCAGTGTACTCTTCCTTCTTCACACCCATGGAATTCGGGTTCTTCAGGGGATTACCGGAGAATTTATTTATACTCGACATTGTTGGACAGATTGCTTTCCTCCTTGACATTGTTTTCCAATTCTTCCTTGCCTACAGAGACAAACAGACATACCGAATGGTCTATAAACGCTCTCCAATAGCACTCAAGTACTTGAAATCCACTTTTGTGACTGATTTGCTTAGCTGTATGCCATGGGACATCATTTATAAGGCTTGTGGGAGAAGAGAGGAGGTGAGATACCTTCTATGGATAAGGTTATTTCGGGTGCGGAAAGTTGATGCTTTTTTTAAGACGATGGAGAAGGATATACGTATTAATTATATGTTTACTAGAATTGTAAAGCTACTTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACTACTCTTCCCGCTTCTGAAGAAGGGTACACATGGATCGGAAGCTTAAAACTAGGGGACTACAGTTACTCACATTTCAGAGAGATTGATTTATGGAAACGCTACACCACATCTTTATATTTTGCCATTGTCACTATGGCCACTGTTGGTTATGGTGATATACATGCAGTCAACTTAAGGGAAATGATATTCATTATGATTTACGTGTCATTTGACATGGTTCTCGGTGCTTACTTGATTGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACGGTGAAATTCAGGGATAAAATGGCAGATGTAATGAAATACATGAACAGAAATAGACTTAGCAGGGAAATCCGTGATCAGATCAAAGGTCACTTACGTTTACAGTATGAAAGTAGCTACACTGAGGCTACTGTTCTACAGGACATACCAATATCAATCCGTGCTAAGATTTCCCAAACACTGTACTTGCCTTACGTTCAGAATGTTTCTCTCTTTAGAGGATGCTCTCCAGAGTTCATCAATCAAATAGTTATTAGACTCCATGAAGAGTTTTTTCTGCCTGGCGAGGTGATAATGGAACAAGGAAATGTGGTTGATCAACTTTATTTTGTCTGTCATGGTGTGCTGGAGGAATTGGGAATAGGACAAGATGGTTCAGAAGAGACCATAGATTTACTACAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAATATTCCTCAACCTTATACAGTTCGAGTGTGTGAATTGTGTAGACTCTTACGCATTGATAAGCAGTCATTTACAAATATCCTTGACATATACTTTTACGACGGGAGAAAAATCTTGAACAACCTTCTAGAGGGAAAAGAAACAAACCTTCGAGTTAAGCAATTGGAGTCAGATATCACATTTCATATTGGCAAACAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATAATGGAGATCTGTACCAATTAAAAGGTCTTGTTCGAGCTGGAGCTGATCCAAACAAGACTGATTATGACGGGAGGTCGCCTTTGCATCTTGCGGCATCCAGAGGATTCGAGGATATAGTAGCTTTCCTTATTCAGGAAGGTGTAAACATTGACCTTAAAGATAATTTTGGCAATACACCATTAATGGAAGCCATCAAGAATGGGAACGACCAAGTTGCTGCTTTGCTTTCTAAAGAAGGTGCTTCATTGAAGGTTGATAGTCCTGGTAGTTTCCTCTGTACAGCAGTTTCAAGGGGTGATTCAGATCTTGTTAAGAGATTATTGTGCTATGGAATTGATCCCAACTCCAAAGATTATGATTCTCGAACTCCGCTACATATAGCTGTCTCAGAAGGGCTAACTTTGATGGCAAAGTTGCTTTTAGAATCTGGGGCTAGTGTTTTCTCGAAGGACAGATGGGGAAACACTCCGCTTGATGAAGGCCGAATTTGTGGAAACAAAAGTATGCTTAAGCTCTTGGAAGAGGCAAAAGCTTCACAGTTGTCAGAATCTCCTTATTCCTCTCGAGAATTCACAGACAAAAAACCCACAAAGAAATGTACGGTGTTTCCCTTCCACCCATGGGATCCTGAAGAAAACAAAAGACCTGGAATTGTGCTATGGGTTCCACTAACCATTGAAGAGCTCATCAAAGAATCATCAGAACAGCTACAAGTTTCAGGTGAATGTTGTATATTATCAGAAGACGGAGGTAAAATTCTTGATGTCCATATGCTTGATGAATCTCAAAAGCTGTATCTAGTTCCTGAAACTCATTAA 2487 41.01 MAVSGGREKEEEAGNYRRTDSDGEVEYTVESVRERITSSRGSRFNLIQTQLRIDQNRRRFSRENLINGIKCLVILPDSRWYRAWTKFILIWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLLDIVFQFFLAYRDKQTYRMVYKRSPIALKYLKSTFVTDLLSCMPWDIIYKACGRREEVRYLLWIRLFRVRKVDAFFKTMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPASEEGYTWIGSLKLGDYSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSREIRDQIKGHLRLQYESSYTEATVLQDIPISIRAKISQTLYLPYVQNVSLFRGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEELGIGQDGSEETIDLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRIDKQSFTNILDIYFYDGRKILNNLLEGKETNLRVKQLESDITFHIGKQEAELALKVNSAAYNGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVAFLIQEGVNIDLKDNFGNTPLMEAIKNGNDQVAALLSKEGASLKVDSPGSFLCTAVSRGDSDLVKRLLCYGIDPNSKDYDSRTPLHIAVSEGLTLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKSMLKLLEEAKASQLSESPYSSREFTDKKPTKKCTVFPFHPWDPEENKRPGIVLWVPLTIEELIKESSEQLQVSGECCILSEDGGKILDVHMLDESQKLYLVPETH 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12374775 12384721 - MELO3C022820.2.1 Cme09g00898 337758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00898 828 Pfam Cyclic nucleotide-binding domain 422 506 IPR000595 -
Cme09g00898 828 ProSiteProfiles Ankyrin repeat profile. 612 644 IPR002110 GO:0005515
Cme09g00898 828 PRINTS EAG/ELK/ERG potassium channel family signature 117 127 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme09g00898 828 PRINTS EAG/ELK/ERG potassium channel family signature 226 236 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme09g00898 828 PRINTS EAG/ELK/ERG potassium channel family signature 274 291 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme09g00898 828 PRINTS EAG/ELK/ERG potassium channel family signature 318 327 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme09g00898 828 PANTHER POTASSIUM CHANNEL AKT1 7 827 IPR045319 GO:0005249|GO:0006813
Cme09g00898 828 Gene3D - 645 741 IPR036770 -
Cme09g00898 828 ProSiteProfiles Ankyrin repeat region circular profile. 676 708 - -
Cme09g00898 828 ProSiteProfiles Ankyrin repeat region circular profile. 612 641 - -
Cme09g00898 828 MobiDBLite consensus disorder prediction 1 23 - -
Cme09g00898 828 Pfam Ankyrin repeats (3 copies) 649 729 IPR002110 GO:0005515
Cme09g00898 828 Pfam Ankyrin repeats (3 copies) 554 640 IPR002110 GO:0005515
Cme09g00898 828 PRINTS Ankyrin repeat signature 580 595 IPR002110 GO:0005515
Cme09g00898 828 PRINTS Ankyrin repeat signature 692 706 IPR002110 GO:0005515
Cme09g00898 828 Gene3D Helix hairpin bin 329 385 - -
Cme09g00898 828 SUPERFAMILY Ankyrin repeat 551 731 IPR036770 -
Cme09g00898 828 SMART cnmp_10 402 520 IPR000595 -
Cme09g00898 828 CDD CAP_ED 402 516 IPR000595 -
Cme09g00898 828 ProSiteProfiles KHA domain profile. 755 828 IPR021789 -
Cme09g00898 828 ProSiteProfiles Ankyrin repeat profile. 676 708 IPR002110 GO:0005515
Cme09g00898 828 ProSiteProfiles Ankyrin repeat region circular profile. 579 611 - -
Cme09g00898 828 SMART ANK_2a 643 672 IPR002110 GO:0005515
Cme09g00898 828 SMART ANK_2a 676 705 IPR002110 GO:0005515
Cme09g00898 828 SMART ANK_2a 579 608 IPR002110 GO:0005515
Cme09g00898 828 SMART ANK_2a 612 641 IPR002110 GO:0005515
Cme09g00898 828 SMART ANK_2a 709 738 IPR002110 GO:0005515
Cme09g00898 828 ProSiteProfiles cAMP/cGMP binding motif profile. 402 522 IPR000595 -
Cme09g00898 828 SUPERFAMILY cAMP-binding domain-like 330 520 IPR018490 -
Cme09g00898 828 PANTHER POTASSIUM CHANNEL SKOR-LIKE 7 827 - -
Cme09g00898 828 Gene3D Jelly Rolls 386 526 IPR014710 -
Cme09g00898 828 ProSiteProfiles Ankyrin repeat profile. 579 611 IPR002110 GO:0005515
Cme09g00898 828 Gene3D - 545 644 IPR036770 -
Cme09g00898 828 Pfam KHA, dimerisation domain of potassium ion channel 754 823 IPR021789 -
Cme09g00898 828 Gene3D - 84 328 - -
Cme09g00898 828 Pfam Ion transport protein 82 327 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme09g00898 828 SUPERFAMILY Voltage-gated potassium channels 76 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00694 Cme-Chr9:7878110 Cme09g00898 Cme-Chr9:12374775 2.81E-12 dispersed
Cme09g00898 Cme-Chr9:12374775 Cme12g01221 Cme-Chr12:20340316 1.00E-84 dispersed
Cme09g00898 Cme-Chr9:12374775 Cme12g01253 Cme-Chr12:20660326 5.77E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00898 K21867 - csv:101210912 1630.54