Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme09g00932 | ATGTCACTTGCAAATTCAGCTATACAAGAAGTTGATGGCATGGAGAAAAATGGGGGTGGATATTTGAAGAGTTTAGCCATTGGAAAAGGCCATGATCAAAATCCAAATGGTGACTTTGTGTTCCGAGACGCCACGAATTATCAACTCGGGCTACAACAACAACAATCTCTCATCAACTTCGGTCATAAGATGAATAATGAATCTTTGTTGAGCTTTGAAGCACAAGGAATTTGTCAATTAGATCTCACTTATAATTGGGATGATCAGGAACGTGTGATGGAAGATCCTAATTGTTTTCAAACAGCTACAAGTCATAATAATTATAGTCCTTCAAAAGATCATCACCATAATAAAAATGGAAATAGTGGTTCTGTTTACGAGTGGCTTTATTGCGAATCAACAACTGATTTTTCTGATTCCATTCAAGACGCTGAAGGAACTCAAGAGATTGTTCCCAATCACAAGCGATCGCATAGCACGGGAGAGAGCAGTGGGAGTGTATGCAAGAAGCAATGCACTGCTGCACCTAAGAAACAGAAACCCAAATCAGCAACAGCCAAAGATCCACAAAGCATTGCAGCCAAGAATCGAAGAGAAAGGATTAGCGAGAGGCTGAAAATACTCCAAGAATTGGTTCCAAATGGCTCTAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGTTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCAACAGATGAATTTTGGCCAGTTCAAGGTGGGAAAGCTCCAGATATTTCACAAGTAAAGGAAGCCATTGATGTCATTCTTTCATCTCAAAGAGAAAGAAGCTCAAGCTCAAACACTGAAAAGTGA | 849 | 39.34 | MSLANSAIQEVDGMEKNGGGYLKSLAIGKGHDQNPNGDFVFRDATNYQLGLQQQQSLINFGHKMNNESLLSFEAQGICQLDLTYNWDDQERVMEDPNCFQTATSHNNYSPSKDHHHNKNGNSGSVYEWLYCESTTDFSDSIQDAEGTQEIVPNHKRSHSTGESSGSVCKKQCTAAPKKQKPKSATAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVQGGKAPDISQVKEAIDVILSSQRERSSSSNTEK | 282 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 13028405 | 13031401 | + | MELO3C022846.2.1 | Cme09g00932 | 337792 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme09g00932 | 282 | Pfam | Helix-loop-helix DNA-binding domain | 192 | 235 | IPR011598 | GO:0046983 | |
| Cme09g00932 | 282 | SMART | finulus | 191 | 240 | IPR011598 | GO:0046983 | |
| Cme09g00932 | 282 | Gene3D | - | 178 | 242 | IPR036638 | GO:0046983 | |
| Cme09g00932 | 282 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 185 | 234 | IPR011598 | GO:0046983 | |
| Cme09g00932 | 282 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 185 | 243 | IPR036638 | GO:0046983 | |
| Cme09g00932 | 282 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 31 | 270 | - | - | |
| Cme09g00932 | 282 | CDD | bHLH_AtIND_like | 186 | 248 | - | - | |
| Cme09g00932 | 282 | MobiDBLite | consensus disorder prediction | 149 | 196 | - | - | |
| Cme09g00932 | 282 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 31 | 270 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme07g00293 | Cme-Chr7:1901015 | Cme09g00932 | Cme-Chr9:13028405 | 2.57E-28 | dispersed | |
| Cme07g02178 | Cme-Chr7:26146937 | Cme09g00932 | Cme-Chr9:13028405 | 4.61E-25 | dispersed | |
| Cme09g00932 | Cme-Chr9:13028405 | Cme02g01076 | Cme-Chr2:15788112 | 8.91E-19 | dispersed | |
| Cme09g00932 | Cme-Chr9:13028405 | Cme01g00118 | Cme-Chr1:844087 | 2.85E-26 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41940 | PF00010 | HLH | 8.80E-08 | No_clan | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme09g00932 | - | - | csv:101209438 | 540.806 |