Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00942 ATGAAGAGGGAGCTTGAAGATGATAGATCTACTACACCTGGGGATTCCCGGAGGATCGTGAAAGGAGATTGTTCTTCAATGTCGTCTGGAAAACTCAAGATGTGGCACCTCCAGGAGGAGGAGGCCGGGGAGGATGCCAAAGACGGCGCCGCCGGTGGAATGGATGAGCTACTTGCTGTTTTGGGTTACAAAGTTCGTTCCTCAGATATGGCGGATGTCGCTTTGAAGTTGGAGCAGCTTGAGATGGTCATGGGAACTGCTCATGAACATGGGATTTCTCATCTTGCTTCCGATACTGTTCATTATAATCCTTCTGATCTCTCTTCTTGGGTTCAAAATATGCTCTCTGAATTCAATAATTCCACTAACCATTTTAATCCTCCCCCTCAATCTTCTCCCTATTCCAATTGTCACCACCCCATTCAATCTACGAAATCTTGTTTCTACGACGATGATTCTGAGTACGATCTTAGTGCCATTCCTGGCGTTGCGGTTTTACCTCCTAAAGATGAAACCCAAACTAATTCTCGTAAGCGATTGAAGATTGAAACACAGAGTAGTTCGGTTAATTTGCTACCGTCGCCGTCCTCCTCTTCGCCGCCGTTCGCTTCTACGCCCGGGATTGCCTCTGAATCTTCGCGGCCGGTGATGGTTGTGGAAGAGGAGTCACAAGAGACCGGGATTCAACTTGTTCACGCTCTAATGGCTTGCGCTGAAGCTGTACAGCAAGAGAATATGAAGCTCGCCGATGCGTTGGTTAAGCACATCGGATTTCTTGCAACGTCTCAAGCTGGCGCTATGAGGAAAGTCGCCACGTATTTCGCTCAAGCCCTAGCTCGTCGGATTTACAGAATCTATTCTCCTCAAGATGGACTATACTCCTCCTACTCCGATCCTCTTCAGATGCACTTTTACGAAACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCCAATCAAGCCATTCTTGAAGCGTTCGCGACGGCGGCGAGAGTTCATGTCATCGATTTCAGTCTTAATCAAGGTATGCAATGGCCTGCGCTTATGCAGGCACTCGCGTTGCGGCCTGGAGGTCCACCGGCGTTTCGATTGACTGGAATCGGCCCGCCGCAGCCGGAAAATGCAGCGGGTTCGTTGCAGCAAGTCGGTTGGAAGTTAGCGCAGATGGCAGAGGCCATTGGTGTTGATTTCGAGTTCAATCACATCGTGTGTAGTAATCTAGCGGATCTGGATTCGGCAGCTCTTGAGATTCGACCGGCGGCAGTGGAGGCGGTAGCGGTGAACTCGGTGTTCGATCTGCACCGGTTGTTGGCTCGGCCTGGAGCGATCGAGAAGGTTTTGGGATCGATAAAGACGACGAAGCCGAAGATAGTAACGATTGTGGAACAAGAAGCGAATCACAACGGGCCGGTTTTCCTGGACCGGTTTACTGAGGCGTTGCATTATTACTCGAATCTGTTTGACTCGTTGGAAGGGTCTTCGAGCGGGTTCGAACCGGGAAGTGAGGACGTGTTGTTGTCGGAGGTTTATTTAGGGAAGCAGATATGCAACGTGGTGGCTTGTGAAGGAACGAACCGAGTGGAGAGGCATGAATCACTGACTCAGTGGCGAACTCGGATGGAATCGGCGGGGTTTGACCCGGTCCATCTCGGTTCAAACGCGTTTAAACAAGCAAGTATGCTTTTGGCCCTCTTTGCGGGAGGAGAAGGGTACAGGGTGGAAGAGAATAATGGGTGTTTAATGCTTGGCTGGCACACTCGACCGTTGATCGCCACGTCAGCATGGCAACTCGCTCCTGATGAGTCGAAGTGA 1812 50.5 MKRELEDDRSTTPGDSRRIVKGDCSSMSSGKLKMWHLQEEEAGEDAKDGAAGGMDELLAVLGYKVRSSDMADVALKLEQLEMVMGTAHEHGISHLASDTVHYNPSDLSSWVQNMLSEFNNSTNHFNPPPQSSPYSNCHHPIQSTKSCFYDDDSEYDLSAIPGVAVLPPKDETQTNSRKRLKIETQSSSVNLLPSPSSSSPPFASTPGIASESSRPVMVVEEESQETGIQLVHALMACAEAVQQENMKLADALVKHIGFLATSQAGAMRKVATYFAQALARRIYRIYSPQDGLYSSYSDPLQMHFYETCPYLKFAHFTANQAILEAFATAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGIGPPQPENAAGSLQQVGWKLAQMAEAIGVDFEFNHIVCSNLADLDSAALEIRPAAVEAVAVNSVFDLHRLLARPGAIEKVLGSIKTTKPKIVTIVEQEANHNGPVFLDRFTEALHYYSNLFDSLEGSSSGFEPGSEDVLLSEVYLGKQICNVVACEGTNRVERHESLTQWRTRMESAGFDPVHLGSNAFKQASMLLALFAGGEGYRVEENNGCLMLGWHTRPLIATSAWQLAPDESK 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13183531 13185594 - MELO3C022854.2.1 Cme09g00942 337802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00942 603 Pfam Transcriptional regulator DELLA protein N terminal 55 122 IPR021914 -
Cme09g00942 603 Pfam GRAS domain family 230 596 IPR005202 -
Cme09g00942 603 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 48 596 IPR005202 -
Cme09g00942 603 ProSiteProfiles GRAS family profile. 221 596 IPR005202 -
Cme09g00942 603 MobiDBLite consensus disorder prediction 1 16 - -
Cme09g00942 603 MobiDBLite consensus disorder prediction 1 27 - -
Cme09g00942 603 Gene3D - 53 118 IPR038088 -
Cme09g00942 603 PANTHER DELLA PROTEIN RGL1 48 596 IPR030006 GO:0003712|GO:0005634
Cme09g00942 603 MobiDBLite consensus disorder prediction 179 211 - -
Cme09g00942 603 MobiDBLite consensus disorder prediction 166 216 - -
Cme09g00942 603 SMART DELLA_2 55 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00942 K14494 DELLA; DELLA protein - csv:101213911 1125.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02194 Cme-Chr1:30772301 Cme09g00942 Cme-Chr9:13183531 1.47E-47 dispersed
Cme02g01276 Cme-Chr2:18588609 Cme09g00942 Cme-Chr9:13183531 6.02E-150 dispersed
Cme03g00100 Cme-Chr3:1431480 Cme09g00942 Cme-Chr9:13183531 5.70E-103 dispersed
Cme06g01579 Cme-Chr6:15842873 Cme09g00942 Cme-Chr9:13183531 0 dispersed
Cme09g00942 Cme-Chr9:13183531 Cme09g01376 Cme-Chr9:19022258 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02627 . 74 751 GRAS Transcription Factor Family AT2G37650 54.7 1.8e-198 689.5
Cme12g00163 . 316 698 GRAS Transcription Factor Family AT3G46600 56.1 7.2e-126 448.0
Cme08g00635 . 47 467 GRAS Transcription Factor Family AT3G49950 60.1 1.1e-136 483.4
Cme08g02035 . 356 732 GRAS Transcription Factor Family AT5G41920 56.6 3.2e-115 412.1
Cme07g01458 . 1 243 GRAS Transcription Factor Family AT5G41920 72.7 1.9e-99 359.8
Cme08g00842 . 48 652 GRAS Transcription Factor Family AT5G66770 58.4 1.5e-177 619.8
Cme07g01720 . 1 590 GRAS Transcription Factor Family AT5G66770 55.9 1.1e-172 603.6
Cme11g00929 . 57 545 GRAS Transcription Factor Family AT1G50600 59.9 2.8e-164 575.5
Cme06g02786 . 46 544 GRAS Transcription Factor Family AT1G50600 57.7 6.1e-159 557.8
Cme08g00456 . 103 541 GRAS Transcription Factor Family AT1G50600 55.2 3.5e-138 488.8
Cme04g00788 . 202 593 GRAS Transcription Factor Family AT1G50600 57.7 2.2e-132 469.5
Cme09g01376 . 44 581 GRAS Transcription Factor Family AT1G14920 68.4 1.5e-208 722.6
Cme09g00942 . 53 600 GRAS Transcription Factor Family AT1G14920 60.9 1.2e-181 633.3
Cme06g01579 . 30 554 GRAS Transcription Factor Family AT1G14920 55.1 3.3e-152 535.4
Cme09g00942 . 51 597 GRAS Transcription Factor Family AT1G66350 61.1 1.4e-179 626.3
Cme09g01376 . 1 579 GRAS Transcription Factor Family AT1G66350 56.9 1.5e-173 606.3
Cme06g01579 . 1 553 GRAS Transcription Factor Family AT1G66350 54.8 6.6e-158 554.3
Cme11g00929 . 19 545 GRAS Transcription Factor Family AT5G48150 66.2 5.5e-194 674.1
Cme06g02786 . 17 544 GRAS Transcription Factor Family AT5G48150 57.4 1.4e-168 589.7
Cme08g00456 . 96 541 GRAS Transcription Factor Family AT5G48150 57.1 9.5e-146 513.8
Cme04g00788 . 128 593 GRAS Transcription Factor Family AT5G48150 53.1 2.3e-136 482.6
Cme09g01376 . 46 578 GRAS Transcription Factor Family AT2G01570 69.3 3.1e-212 734.9
Cme09g00942 . 55 598 GRAS Transcription Factor Family AT2G01570 62.2 3.1e-188 655.2
Cme06g01579 . 30 554 GRAS Transcription Factor Family AT2G01570 57.6 9.9e-158 553.9
Cme09g00942 . 51 597 GRAS Transcription Factor Family AT1G66350 61.1 1.4e-179 626.3
Cme09g01376 . 1 579 GRAS Transcription Factor Family AT1G66350 56.9 1.5e-173 606.3
Cme06g01579 . 1 553 GRAS Transcription Factor Family AT1G66350 54.8 6.6e-158 554.3
Cme09g00942 . 55 598 GRAS Transcription Factor Family AT3G03450 61.5 1.4e-177 619.8
Cme09g01376 . 46 578 GRAS Transcription Factor Family AT3G03450 60.0 8.0e-170 594.0
Cme06g01579 . 30 554 GRAS Transcription Factor Family AT3G03450 56.3 3.4e-152 535.4
Cme09g00942 . 44 600 GRAS Transcription Factor Family AT5G17490 56.2 4.7e-159 558.1
Cme09g01376 . 42 578 GRAS Transcription Factor Family AT5G17490 56.8 1.8e-155 546.2
Cme06g01579 . 26 554 GRAS Transcription Factor Family AT5G17490 51.5 9.8e-133 470.7
Cme01g00709 . 1 570 GRAS Transcription Factor Family AT1G21450 58.2 1.4e-175 613.2
Cme06g02786 . 168 544 GRAS Transcription Factor Family AT1G21450 51.9 5.4e-111 398.7
Cme04g00788 . 225 593 GRAS Transcription Factor Family AT1G21450 50.8 1.2e-107 387.5
Cme12g00163 . 324 698 GRAS Transcription Factor Family AT5G59450 56.2 4.2e-127 452.2
Cme04g02627 . 302 751 GRAS Transcription Factor Family AT5G59450 50.8 6.7e-125 444.9
Cme08g00456 . 1 541 GRAS Transcription Factor Family AT4G17230 58.3 4.9e-172 601.3
Cme11g00929 . 52 545 GRAS Transcription Factor Family AT4G17230 52.8 2.4e-142 502.7
Cme06g02786 . 49 544 GRAS Transcription Factor Family AT4G17230 52.3 1.6e-135 479.9
Cme04g00788 . 220 593 GRAS Transcription Factor Family AT4G17230 51.9 6.9e-110 394.8
Cme11g00929 . 134 545 GRAS Transcription Factor Family AT2G04890 66.1 2.6e-160 562.0
Cme06g02786 . 148 544 GRAS Transcription Factor Family AT2G04890 59.4 1.3e-140 496.5
Cme04g00788 . 206 593 GRAS Transcription Factor Family AT2G04890 56.2 2.8e-127 452.2
Cme08g00456 . 161 541 GRAS Transcription Factor Family AT2G04890 56.7 1.0e-121 433.7
Cme02g00585 . 1 471 GRAS Transcription Factor Family AT1G50420 66.9 3.5e-177 618.2
Cme10g00052 . 1 462 GRAS Transcription Factor Family AT1G50420 61.1 4.5e-156 548.1
Cme06g02576 . 405 768 GRAS Transcription Factor Family AT4G00150 55.7 3.5e-104 375.9
Cme07g01720 . 1 590 GRAS Transcription Factor Family AT3G50650 51.7 2.3e-153 539.3
Cme08g02035 . 77 730 GRAS Transcription Factor Family AT3G54220 60.1 1.2e-204 709.9
Cme07g01458 . 1 244 GRAS Transcription Factor Family AT3G54220 66.4 2.3e-91 333.6
Cme08g00647 . 90 490 GRAS Transcription Factor Family AT4G37650 67.6 2.1e-159 559.3
Cme11g00273 . 115 507 GRAS Transcription Factor Family AT4G37650 56.5 3.4e-125 445.7
Cme11g02451 . 69 461 GRAS Transcription Factor Family AT4G37650 50.2 3.7e-111 399.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000304 5 4 4 7 5 4 8 4 4 4 4 4 8 4 3 7 4 8 8 4 4 3 4 4 4 4 4 4 4 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41941 PF03514 GRAS 7.80E-134 CL0063 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g00942 Cme_Chr09 FPKM 4.807303 4.235377 2.281954 2.466796 7.047108 6.42215 6.439869 2.125375 1.818685 1.820358