Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00942 ATGAAGAGGGAGCTTGAAGATGATAGATCTACTACACCTGGGGATTCCCGGAGGATCGTGAAAGGAGATTGTTCTTCAATGTCGTCTGGAAAACTCAAGATGTGGCACCTCCAGGAGGAGGAGGCCGGGGAGGATGCCAAAGACGGCGCCGCCGGTGGAATGGATGAGCTACTTGCTGTTTTGGGTTACAAAGTTCGTTCCTCAGATATGGCGGATGTCGCTTTGAAGTTGGAGCAGCTTGAGATGGTCATGGGAACTGCTCATGAACATGGGATTTCTCATCTTGCTTCCGATACTGTTCATTATAATCCTTCTGATCTCTCTTCTTGGGTTCAAAATATGCTCTCTGAATTCAATAATTCCACTAACCATTTTAATCCTCCCCCTCAATCTTCTCCCTATTCCAATTGTCACCACCCCATTCAATCTACGAAATCTTGTTTCTACGACGATGATTCTGAGTACGATCTTAGTGCCATTCCTGGCGTTGCGGTTTTACCTCCTAAAGATGAAACCCAAACTAATTCTCGTAAGCGATTGAAGATTGAAACACAGAGTAGTTCGGTTAATTTGCTACCGTCGCCGTCCTCCTCTTCGCCGCCGTTCGCTTCTACGCCCGGGATTGCCTCTGAATCTTCGCGGCCGGTGATGGTTGTGGAAGAGGAGTCACAAGAGACCGGGATTCAACTTGTTCACGCTCTAATGGCTTGCGCTGAAGCTGTACAGCAAGAGAATATGAAGCTCGCCGATGCGTTGGTTAAGCACATCGGATTTCTTGCAACGTCTCAAGCTGGCGCTATGAGGAAAGTCGCCACGTATTTCGCTCAAGCCCTAGCTCGTCGGATTTACAGAATCTATTCTCCTCAAGATGGACTATACTCCTCCTACTCCGATCCTCTTCAGATGCACTTTTACGAAACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCCAATCAAGCCATTCTTGAAGCGTTCGCGACGGCGGCGAGAGTTCATGTCATCGATTTCAGTCTTAATCAAGGTATGCAATGGCCTGCGCTTATGCAGGCACTCGCGTTGCGGCCTGGAGGTCCACCGGCGTTTCGATTGACTGGAATCGGCCCGCCGCAGCCGGAAAATGCAGCGGGTTCGTTGCAGCAAGTCGGTTGGAAGTTAGCGCAGATGGCAGAGGCCATTGGTGTTGATTTCGAGTTCAATCACATCGTGTGTAGTAATCTAGCGGATCTGGATTCGGCAGCTCTTGAGATTCGACCGGCGGCAGTGGAGGCGGTAGCGGTGAACTCGGTGTTCGATCTGCACCGGTTGTTGGCTCGGCCTGGAGCGATCGAGAAGGTTTTGGGATCGATAAAGACGACGAAGCCGAAGATAGTAACGATTGTGGAACAAGAAGCGAATCACAACGGGCCGGTTTTCCTGGACCGGTTTACTGAGGCGTTGCATTATTACTCGAATCTGTTTGACTCGTTGGAAGGGTCTTCGAGCGGGTTCGAACCGGGAAGTGAGGACGTGTTGTTGTCGGAGGTTTATTTAGGGAAGCAGATATGCAACGTGGTGGCTTGTGAAGGAACGAACCGAGTGGAGAGGCATGAATCACTGACTCAGTGGCGAACTCGGATGGAATCGGCGGGGTTTGACCCGGTCCATCTCGGTTCAAACGCGTTTAAACAAGCAAGTATGCTTTTGGCCCTCTTTGCGGGAGGAGAAGGGTACAGGGTGGAAGAGAATAATGGGTGTTTAATGCTTGGCTGGCACACTCGACCGTTGATCGCCACGTCAGCATGGCAACTCGCTCCTGATGAGTCGAAGTGA 1812 50.5 MKRELEDDRSTTPGDSRRIVKGDCSSMSSGKLKMWHLQEEEAGEDAKDGAAGGMDELLAVLGYKVRSSDMADVALKLEQLEMVMGTAHEHGISHLASDTVHYNPSDLSSWVQNMLSEFNNSTNHFNPPPQSSPYSNCHHPIQSTKSCFYDDDSEYDLSAIPGVAVLPPKDETQTNSRKRLKIETQSSSVNLLPSPSSSSPPFASTPGIASESSRPVMVVEEESQETGIQLVHALMACAEAVQQENMKLADALVKHIGFLATSQAGAMRKVATYFAQALARRIYRIYSPQDGLYSSYSDPLQMHFYETCPYLKFAHFTANQAILEAFATAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGIGPPQPENAAGSLQQVGWKLAQMAEAIGVDFEFNHIVCSNLADLDSAALEIRPAAVEAVAVNSVFDLHRLLARPGAIEKVLGSIKTTKPKIVTIVEQEANHNGPVFLDRFTEALHYYSNLFDSLEGSSSGFEPGSEDVLLSEVYLGKQICNVVACEGTNRVERHESLTQWRTRMESAGFDPVHLGSNAFKQASMLLALFAGGEGYRVEENNGCLMLGWHTRPLIATSAWQLAPDESK 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13183531 13185594 - MELO3C022854.2.1 Cme09g00942 337802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00942 603 Pfam Transcriptional regulator DELLA protein N terminal 55 122 IPR021914 -
Cme09g00942 603 Pfam GRAS domain family 230 596 IPR005202 -
Cme09g00942 603 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 48 596 IPR005202 -
Cme09g00942 603 ProSiteProfiles GRAS family profile. 221 596 IPR005202 -
Cme09g00942 603 MobiDBLite consensus disorder prediction 1 16 - -
Cme09g00942 603 MobiDBLite consensus disorder prediction 1 27 - -
Cme09g00942 603 Gene3D - 53 118 IPR038088 -
Cme09g00942 603 PANTHER DELLA PROTEIN RGL1 48 596 IPR030006 GO:0003712|GO:0005634
Cme09g00942 603 MobiDBLite consensus disorder prediction 179 211 - -
Cme09g00942 603 MobiDBLite consensus disorder prediction 166 216 - -
Cme09g00942 603 SMART DELLA_2 55 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02194 Cme-Chr1:30772301 Cme09g00942 Cme-Chr9:13183531 1.47E-47 dispersed
Cme02g01276 Cme-Chr2:18588609 Cme09g00942 Cme-Chr9:13183531 6.02E-150 dispersed
Cme03g00100 Cme-Chr3:1431480 Cme09g00942 Cme-Chr9:13183531 5.70E-103 dispersed
Cme06g01579 Cme-Chr6:15842873 Cme09g00942 Cme-Chr9:13183531 0 dispersed
Cme09g00942 Cme-Chr9:13183531 Cme09g01376 Cme-Chr9:19022258 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41941 PF03514 GRAS 7.80E-134 CL0063 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00942 K14494 - csv:101213911 1125.54