Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01018 ATGTCGCCATCTCTTCCACTTCACTTCCTCTTTACTGTCGCAGCATTTCTCACATCTCCAGTCTCCTCCCATTTCTCTTCTACATCCTCCTCGCCCTCCCCGGATTCCACCCCTTCTCTCTCAGACTGGAGATCTGCTCGTGCCACCTACTACGCCGCCTCCGACCCTCGCGATGCGGTCGGCGGAGCCTGTGGTTATGGCGATTTAGTGAAGGCAGGCTATGGCATGGCCACTGTTGGTCTCAGCGAGTCGTTGTTTGAACGCGGACAGATCTGCGGTGCCTGCTTTCAGCTTCGGTGTGTGGAGGACCTCCGGTGGTGTATTCCTGGAACCTCTATCATTGTCACTGTTACTAATTTCTGTGCGCCTAATTATGGCTTCACGGCTGAGGGTGGAGGCCATTGTAACCCTCCTAATAAGCATTTTGTTCTCCCTATTGAGGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGGATCAAATGCCGAAAGGAAGGGGGTATTCGATATACCGTTTCTGGGTATGGCATTTATCTCTCAGTGTTGATAAGTAACGTTGCTGGGGCTGGAGATGTTAGTGCTGTAAAGATCAAGGGCACAAGAACTGGTTGGCTTCCGATGGGTCGTAACTGGGGGCAAAACTGGCACATTAATGCTGATTTGAACCATCAAGCCCTTTCGTTCGAAGTCACTAGCAGTGATGGAGTAACAATTTCATCCTACAATGTTGCTCCAAAGGATTGGAACTTTGGGCAGACTTTTGAAGGCAAACAGTTTGAATCTTGA 807 50.06 MSPSLPLHFLFTVAAFLTSPVSSHFSSTSSSPSPDSTPSLSDWRSARATYYAASDPRDAVGGACGYGDLVKAGYGMATVGLSESLFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRYTVSGYGIYLSVLISNVAGAGDVSAVKIKGTRTGWLPMGRNWGQNWHINADLNHQALSFEVTSSDGVTISSYNVAPKDWNFGQTFEGKQFES 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14292204 14302832 - MELO3C025095.2.1 Cme09g01018 337878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01018 268 Gene3D - 27 170 IPR036908 -
Cme09g01018 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 174 IPR007112 -
Cme09g01018 268 Gene3D - 175 266 IPR036749 -
Cme09g01018 268 SUPERFAMILY Barwin-like endoglucanases 42 192 IPR036908 -
Cme09g01018 268 Pfam Expansin C-terminal domain 175 252 IPR007117 -
Cme09g01018 268 PANTHER EXPANSIN-A13 25 267 - -
Cme09g01018 268 SUPERFAMILY PHL pollen allergen 171 263 IPR036749 -
Cme09g01018 268 SMART dpbb_1 78 164 IPR007112 -
Cme09g01018 268 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Cme09g01018 268 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cme09g01018 268 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Cme09g01018 268 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Cme09g01018 268 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Cme09g01018 268 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Cme09g01018 268 PRINTS Expansin signature 73 87 IPR002963 GO:0009664
Cme09g01018 268 PRINTS Expansin signature 100 111 IPR002963 GO:0009664
Cme09g01018 268 PRINTS Expansin signature 113 123 IPR002963 GO:0009664
Cme09g01018 268 PRINTS Expansin signature 132 149 IPR002963 GO:0009664
Cme09g01018 268 PRINTS Expansin signature 149 162 IPR002963 GO:0009664
Cme09g01018 268 PRINTS Expansin signature 173 185 IPR002963 GO:0009664
Cme09g01018 268 PRINTS Expansin signature 185 206 IPR002963 GO:0009664
Cme09g01018 268 PRINTS Expansin signature 220 241 IPR002963 GO:0009664
Cme09g01018 268 PRINTS Expansin signature 249 265 IPR002963 GO:0009664
Cme09g01018 268 PANTHER EXPANSIN-A15 25 267 IPR002963 GO:0009664
Cme09g01018 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 263 IPR007117 -
Cme09g01018 268 Pfam Lytic transglycolase 79 164 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01018 Cme-Chr9:14292204 Cme08g02411 Cme-Chr8:30997262 1.99E-89 dispersed
Cme09g01018 Cme-Chr9:14292204 Cme11g01314 Cme-Chr11:19942997 3.55E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01018 - - csv:101206236 531.176