Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01035 ATGGCGCGCCGGAATCACCACCGGCTCTGTTTTTCATCCATGCTGTTTCTTGTTTTAATCTTCTTTTCTGTAGCAGAAGCAGAGCTTGACCTTGCCTCCGACATGGCGGCGTTGGTGGCGCTTCAGAAGGCCATGGGTGTTTTGAGCCGGACTCGCTATTGGAACCTCTCTGATAATAATCCATGTTCATGGCTTGGTGTTACTTGCGGCGGCGGGAGGGTTACTGAACTGCGGCTTCCTGGCGTTGGTCTTGTCGGGCAACTTCCGTTAGGGCTGGGAAATTTGACTCAACTTCAAATCCTATCTCTTCGTTCTAACATGCTTTCAGGTTCTATTCCCTCTGATTTTGCAAACCTCCGCTCCCTCCGGAATCTGTACTTGCAATGGAATTCATTTTCCGGCGAGATTCCTCCGGTTCTGTTCAGTATTCGTAGTCTTGTTCGTCTGAATTTGGCCCACAACAAGTTCGTTGGGCCGGTTCCATTAGGTTTCAATAATCTCACGAACTTACAGGTTCTCAATTTGGAAGAGAATCAACTCGAGGGATTTATTCCTGATTTGAACATTCCCTCACTCAACGCTCTCAATGTTTCTTTCAATGGTCTCAACGGCTCAATCCCTTCTCAATTTTCCAATCAACCAGCCAGTGCCTTCAACGGCAACTCCCTCTGCGGGAAGCCACTGAGCCCTTGCGACGGTGGCGAGAAGAAGAAATTATCTGCTGGAACAATCGCCGGTATTGTCATTGGAAGTTTGATTGCATTTTTTATCATTGTTCTGATTTTGTTCTATTTGTGTCGAAGGGCGATTAGGATTAATCGGCCGAATGATGCTCAGACGACGGCGACAACCTCGGGGAGACTGTCGTCGGAGGTGGAGACTGTGGTGGGAGGAAATAAAGGAGGCGGGAATGAGAGGAACTTGGTATTCTGTAGGAAAGGAGAAATGGTGTTTGACTTGGAAGAACTGTTGAAAGCTTCAGCAGAGGTGTTGGGGAAAGGGAGTTTTGGGTCTACTTATAAGGCAGCTTTGGATGTGGGGATAACTGTGGTGGTTAAGAGGTTAAGAGATGTCAAAGTTTCAGAAGAGGAATTCAAGGAGAAGATTGAAAGCTTGGGGATGATGAATCATCAAAACTTAGTTCCTATTAAGGGTTACTATTATGGCAGAGATGAGAAGCTTCTGCTTTCTGATCATATCTCCATGGGAAGCTTATCTGTACATTTACATGGCAACAAAGATCCTAGTAGGACTTCATTAAAATGGGAAGCAAGGGCTGGCATTGCGCTTGCTGCTGCTCAGGGGATTACGTATCTACATTCTCGACGACCTCCAACCTCTCATGGCAATATAAAGTCTTCAAACATTCTCCTCAACAGGTCCCATACAGCTTGTGTCTCTGACTTCGGTCTCATTCAGATTGCAAGTCCTGCATCCACTCCAAACCATGTTGCAACCTACCGTGCCCCTGAAGTCACTGATCCTCGAAAAGTGTCCCTTAAAGCAGATGTTTACAGTTTTGGCATAGTAATTCTAGAGCTTCTAACAGGGAAGGCTCCGAACTCGGCAATGTTCAACGACGATGGCGTAGACCTACCACGATGGGTGCACTCGAAAGTCGAGGAGAAGAAGACTGCTGAAGTGTTCGACGAGGAGCTGTTAGAATACAAGAATGGCTTGGATGAAATGGTTCAACTTCTGCATCTTGCCATGTTATGTACAGCGCCACACCCGGATAGTCGACCTTCAATGGGGAAGGTGACAAGTCGGATCAACGAAATATATCATTTGATTTTACTTAAAGATCAAGAGATGAGCAATGACAAGTTTTATGATGTGGAGAGTAGTGTTTCTCAGCAATTTTACTCAGCTGATTCAATCATGGTTCCTCTTCCACCTTGA 1902 46.0 MARRNHHRLCFSSMLFLVLIFFSVAEAELDLASDMAALVALQKAMGVLSRTRYWNLSDNNPCSWLGVTCGGGRVTELRLPGVGLVGQLPLGLGNLTQLQILSLRSNMLSGSIPSDFANLRSLRNLYLQWNSFSGEIPPVLFSIRSLVRLNLAHNKFVGPVPLGFNNLTNLQVLNLEENQLEGFIPDLNIPSLNALNVSFNGLNGSIPSQFSNQPASAFNGNSLCGKPLSPCDGGEKKKLSAGTIAGIVIGSLIAFFIIVLILFYLCRRAIRINRPNDAQTTATTSGRLSSEVETVVGGNKGGGNERNLVFCRKGEMVFDLEELLKASAEVLGKGSFGSTYKAALDVGITVVVKRLRDVKVSEEEFKEKIESLGMMNHQNLVPIKGYYYGRDEKLLLSDHISMGSLSVHLHGNKDPSRTSLKWEARAGIALAAAQGITYLHSRRPPTSHGNIKSSNILLNRSHTACVSDFGLIQIASPASTPNHVATYRAPEVTDPRKVSLKADVYSFGIVILELLTGKAPNSAMFNDDGVDLPRWVHSKVEEKKTAEVFDEELLEYKNGLDEMVQLLHLAMLCTAPHPDSRPSMGKVTSRINEIYHLILLKDQEMSNDKFYDVESSVSQQFYSADSIMVPLPP 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14481537 14484550 - MELO3C025083.2.1 Cme09g01035 337895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01035 633 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Cme09g01035 633 CDD TM_EGFR-like 243 268 - -
Cme09g01035 633 Gene3D Phosphorylase Kinase; domain 1 298 399 - -
Cme09g01035 633 ProSiteProfiles Protein kinase domain profile. 325 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01035 633 PANTHER LRR RECEPTOR-LIKE KINASE 13 595 - -
Cme09g01035 633 SUPERFAMILY Protein kinase-like (PK-like) 329 589 IPR011009 -
Cme09g01035 633 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Cme09g01035 633 SUPERFAMILY L domain-like 46 212 - -
Cme09g01035 633 Gene3D Ribonuclease Inhibitor 145 231 IPR032675 -
Cme09g01035 633 Gene3D Ribonuclease Inhibitor 34 143 IPR032675 -
Cme09g01035 633 Pfam Protein tyrosine and serine/threonine kinase 329 590 IPR001245 GO:0004672|GO:0006468
Cme09g01035 633 PANTHER OS05G0588300 PROTEIN 13 595 - -
Cme09g01035 633 SMART LRR_typ_2 119 143 IPR003591 -
Cme09g01035 633 SMART LRR_typ_2 167 190 IPR003591 -
Cme09g01035 633 SMART LRR_typ_2 95 118 IPR003591 -
Cme09g01035 633 Gene3D Transferase(Phosphotransferase) domain 1 400 603 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01035 Cme-Chr9:14481537 Cme12g01818 Cme-Chr12:24622113 0 dispersed
Cme09g01035 Cme-Chr9:14481537 Cme05g01954 Cme-Chr5:28090976 6.84E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65154 PF07714 PK_Tyr_Ser-Thr 6.40E-33 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01035 - - csv:101206516 1121.3