Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01043 ATGGTTCTCTCCAAAACCGCTTCTCAGACCGATGTCTCCGTCCATTCCACCTTCGCTTCCAGATATGTCCGAACCTCTCTCCCAAGATTCAAAATGCCGGAAAATTCGATCCCCAAGGAGGCTGCGTTTCAGATCATTAATGATGAACTCATGCTCGATGGAAACCCTAGGTTAAATTTGGCGTCCTTTGTTACTACCTGGATGGAGCCTGAGTGTGATAAACTCATCATGTCTGCCATCAACAAGAATTACGTTGATATGGATGAATATCCTGTCACCACAGAGCTTCAGAACCGATGTGTGAATATGATAGCACATTTGTTCAATGCCCCATTGGGTGATTCTGAAACGGCAGTGGGAGTTGGAACAGTGGGATCGTCAGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAATGGCAGAACAGAAGGAAGGCTGAAGGCAAGCCCTATGACAAGCCCAACATTGTCACTGGTGCTAATGTCCAGGTATGCTGGGAGAAATTTGCAAGATACTTCGAAGTAGAACTCAAGGAGGTGAAATTGAGGGAAGGTTACTATGTGATGGATCCAGAGAAAGCTGTAGAGATGGTTGATGAGAACACAATCTGTGTTGCAGCCATCTTGGGTTCCACTCTCAATGGAGAATTCGAAGATGTAAAACTCTTAAACGATCTCTTAGTCGAGAAGAACAAAGAAACTGGATGGGATACTCCTATTCATGTTGATGCTGCGAGTGGAGGGTTTATTGCTCCATTCATTTACCCTGAGCTAGAATGGGACTTTAGGTTGCCACTTGTAAAGAGTATTAATGTGAGTGGCCATAAGTATGGGCTTGTGTATGCTGGAATTGGTTGGGTTATCTGGAGGAACAAAGAAGATTTGCCTGAAGAACTTATCTTTCATATCAACTATCTTGGAGCTGACCAACCCACTTTCACCCTCAATTTCTCCAAAGGATCTAGTCAAGTCATTGCTCAGTATTACCAATTGATCCGTTTGGGTTATGAGGGATACCAAAACGTGATGGAAAACTGCAGAGAAAACATGATTGTCCTAAAGGAAGGACTCGAGAGAACAGGGCGGTTCAACATCGTGTCGAAGGACAATGGAGTTCCACTTGTGGCCTTCTCCTTGAAAGACAACACACGCCATACGGAGTTTGAGGTATCAGAAATGCTGAGGAGATTCGGGTGGATTGTACCAGCTTACACCATGCCTCCGGATGCACAACACATAACTGTCCTTAGAGTCGTGATCCGAGAAGATTTTTCTCGCACGCTTGCTGAGCGTCTTGTGAATGATATTGAGAAAACATTGCACGAACTCGATAGCCTCCCATCGAAGGCTGATATGAAGACAACGGTGGCTGGAGAAGAGACGCAGAAGAACAATGTTGTGGTGGCGAAGAAGAGTGCTCTTGAGACACAGAGGGAGATCACAACTGCTTGGAGGAAGTTTGTGATGGAAAAGAAGAAGACGAATGGAGTTTGTTAG 1500 45.0 MVLSKTASQTDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCRENMIVLKEGLERTGRFNIVSKDNGVPLVAFSLKDNTRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVNDIEKTLHELDSLPSKADMKTTVAGEETQKNNVVVAKKSALETQREITTAWRKFVMEKKKTNGVC 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14563274 14571019 - MELO3C025078.2.1 Cme09g01043 337903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01043 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 - -
Cme09g01043 499 Gene3D - 361 448 - -
Cme09g01043 499 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Cme09g01043 499 CDD DOPA_deC_like 59 439 - -
Cme09g01043 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cme09g01043 499 Gene3D - 1 65 - -
Cme09g01043 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cme09g01043 499 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cme09g01043 499 Gene3D - 66 360 IPR015421 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01043 Cme-Chr9:14563274 Cme09g01267 Cme-Chr9:17534463 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01043 K01580 - csv:101216119 998.038