Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01067 ATGGCGAGCCGATACTGGATGGTCTCTTTACCTGTTCAAGGCTCCGCTTCTTCTCTATGGAATCGTCTCCAAGAACAAATCTCTAAGCACTCTTTCGATACTCCTCTTTACAGATTCAATATTCCTAATCTCCGTGTTGGAACGCTGGATTCGCTTCTTTCCCTCAGCGATGATCTTCTAAAGTCGAATACCTTTGTGGAAGGAGTTTCTCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAAGGTTTCAGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTATCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCAACAATGTCGCCTCTGAGAGACATTGTAGATAGCATTCACAGCCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTATAATAATGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGATGATATAATTACCTCAGAGCATCTAGCAACCCTTCTCGTGATTGTTCCCAAGTACTCTCAGAAAGAGTGGCTCTCTAGCTATGAGACACTGACTAGCTATGTGGTTCCCAGGTCTTCCAAGAAGTTATACGAGGATAATGAATATGCCCTTTACACTGTAACACTCTTTAATCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGCTTTAGAAGTTCTTTACTGCAATGGTCCTATGCTAGTTACGCTGAGGTTTTCATTTCCTGGATGCACTTTTGTGCCGTACGTGTTTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCGTTCTTGGCATTTGTTTTGGCGCCTTCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGATAGTGCTAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATGGCTGGTCTTGGAGGAGATTCTGATGCACATCCATATGTCTCATTCACAATCAATCTTGCTTAA 1131 43.06 MASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNTFVEGVSQKIRRQIEELEKVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPDDIITSEHLATLLVIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFNRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESFRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLAFVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEVGGGMAGLGGDSDAHPYVSFTINLA 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14903734 14917889 + MELO3C025061.2.1 Cme09g01067 337927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01067 376 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
Cme09g01067 376 SUPERFAMILY Vacuolar ATP synthase subunit C 2 375 IPR036132 GO:0015078|GO:0033180|GO:1902600
Cme09g01067 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 376 IPR004907 GO:0033180|GO:0046961|GO:1902600
Cme09g01067 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180|GO:0046961|GO:1902600
Cme09g01067 376 Gene3D - 163 251 - -
Cme09g01067 376 Gene3D - 41 312 - -
Cme09g01067 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180|GO:0046961|GO:1902600
Cme09g01067 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01067 K02148 ATPeV1C, ATP6C; V-type H+-transporting ATPase subunit C - csv:101221574 721.465
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01758 . 73 886 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.4
Cme01g01362 . 70 873 Primary Pumps ATPases(2) AT2G28520 63.2 1.6e-294 1008.8
Cme03g01909 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.3 4.2e-215 745.0
Cme01g01362 . 66 878 Primary Pumps ATPases(2) AT2G21410 75.8 0.0e+00 1234.2
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT2G21410 62.5 2.3e-298 1021.5
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT2G21410 76.9 1.2e-238 823.2
Cme01g01362 . 68 878 Primary Pumps ATPases(2) AT4G39080 77.1 0.0e+00 1240.3
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT4G39080 63.4 2.6e-297 1018.1
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT4G39080 77.8 1.6e-238 822.8
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme03g01900 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cme06g00383 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme06g00382 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme03g01900 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.2e-74 274.2
Cme06g00383 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00382 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00383 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme06g00382 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme03g01900 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cme03g01656 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.7 2.3e-70 262.3
Cme04g00385 . 7 160 Primary Pumps ATPases(2) AT2G25610 83.8 5.7e-61 231.1
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.8e-60 227.6
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme03g01656 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.9e-71 265.8
Cme04g00385 . 1 160 Primary Pumps ATPases(2) AT4G32530 73.7 8.7e-64 240.4
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.2 0.0e+00 1666.0
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1669.8
Cme12g00230 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.8 0.0e+00 1319.7
Cme02g00511 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.3e-57 219.2
Cme01g01238 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.3e-268 920.2
Cme04g02533 . 2 109 Primary Pumps ATPases(2) AT3G01390 79.6 3.6e-37 151.0
Cme09g01067 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.0 5.3e-181 630.6
Cme05g00306 . 63 323 Primary Pumps ATPases(2) AT3G58730 81.6 8.4e-117 416.8
Cme04g02122 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.2
Cme03g01900 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.2e-74 274.2
Cme06g00383 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00382 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme01g01238 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 1.1e-269 925.6
Cme06g01749 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 6.5e-66 247.3
Cme01g01238 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.1e-266 912.5
Cme11g01758 . 73 886 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.4
Cme01g01362 . 70 873 Primary Pumps ATPases(2) AT2G28520 63.2 1.6e-294 1008.8
Cme03g01909 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.3 4.2e-215 745.0
Cme04g01965 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 6.1e-192 666.8
Cme06g01749 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.7e-90 327.0
Cme01g02735 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.1 0.0e+00 1172.1
Cme01g01238 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.3e-268 920.2
Cme01g01238 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 1.1e-269 925.6
Cme01g01238 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.1e-266 912.5
Cme09g01067 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.0 5.3e-181 630.6
Cme05g00306 . 63 323 Primary Pumps ATPases(2) AT3G58730 81.6 8.4e-117 416.8
Cme06g01749 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.7e-90 327.0
Cme06g01749 . 1 223 Primary Pumps ATPases(2) AT3G08560 69.5 6.5e-76 280.8
Cme06g01749 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 6.5e-66 247.3
Cme02g00511 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.3e-57 219.2
Cme04g02533 . 2 109 Primary Pumps ATPases(2) AT3G01390 79.6 3.6e-37 151.0
Cme04g02122 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.2
Cme11g01758 . 73 886 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.4
Cme01g01362 . 70 873 Primary Pumps ATPases(2) AT2G28520 63.2 1.6e-294 1008.8
Cme03g01909 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.3 4.2e-215 745.0
Cme01g01362 . 66 878 Primary Pumps ATPases(2) AT2G21410 75.8 0.0e+00 1234.2
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT2G21410 62.5 2.3e-298 1021.5
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT2G21410 76.9 1.2e-238 823.2
Cme01g01362 . 68 878 Primary Pumps ATPases(2) AT4G39080 77.1 0.0e+00 1240.3
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT4G39080 63.4 2.6e-297 1018.1
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT4G39080 77.8 1.6e-238 822.8
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme06g00383 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme06g00382 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme03g01900 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.8e-60 227.6
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme03g01900 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cme06g00383 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme06g00382 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme03g01900 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.2e-74 274.2
Cme06g00383 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00382 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme03g01656 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.9e-71 265.8
Cme04g00385 . 1 160 Primary Pumps ATPases(2) AT4G32530 73.7 8.7e-64 240.4
Cme03g01656 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.7 2.3e-70 262.3
Cme04g00385 . 7 160 Primary Pumps ATPases(2) AT2G25610 83.8 5.7e-61 231.1
Cme04g01965 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 5.3e-199 690.3
Cme04g01965 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 6.1e-192 666.8
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.2 0.0e+00 1666.0
Cme12g00230 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.8 0.0e+00 1319.7
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1669.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007861 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g01067 Cme_Chr09 FPKM 17.880589 20.499313 17.775656 18.233486 18.84376 20.795773 18.768227 11.217313 10.535158 9.738046