Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01127 ATGTCTTCTTCTCTTTCTTGGTTCATCTTCTTTTCTCTCTCCTTCACTTTTTCCCCTACGGCTGCCTCCCTTCCCGACGATGCAATGTCGCTACTCATGTTTAAAAGCTCCATTTCTTTCGGTGCTTCTGATGTTCTTCGTGGTTGGAATTTGTCGGTTTCTCACTGCGATTGGTTTGGTGTTACTTGCGATAATGGTGGTACGCGTAGAGTAGTTGCGCTGAATATTAGTGGAAGTACTGGTGGTGTTATGGCGGAGGGTTCTTTTCTTGCTGGGACGTTGAATCCGTCGATTGGAAATCTTGTTGAGCTTCGTGTTTTGTCGCTTCCGAATAATTTGATGTACGGGGAGATTCCCGGGACTGTTGGTAAGCTTCAGTCGTTAGAGATTCTTGAGCTTCAGGGGAACAATTTCTCTGGAGAGATTCCGAGTCAGATAAGTTCACTTCCATCTCTTCGCTTGCTTAATTTGTCTGATAACTCGGTTTCGGGTTCGATTCCGAGTAAATTGATCGGTTCGGCAAAATTAGAAGTAATTGATTTGTCGTACAATCAATTATCTGGTAATATTCAAGTTGTTGGTAATAGATGTGGCGTTTTGAATCATTTGAGGCTTTCGCATAATTTTCTGACTGGTAACATTCCAGCGGAGATTGGACAATGTTGGAAACTCAGGACTCTGTTACTCGATGGGAATATATTAGAGGGGAAAATTCCGGCTGAGATCGGCCAAATGTCAGAACTCAGAATTCTTGATGTTTCTAGGAATAGCCTTACTGATTCGATTCCAAAAGAGCTTGGTAATTGCCGGAAGTTGTCACAGATCGTGTTAACGAATTTGAACGATATCAATCCCGATAACGACAGTGTAAGAGGAGAATTCAACGCCTTCAATGGAGGCATTCCTTCTGGGTTGTTATTGCTTCCAAGTCTACAAGTTTTATGGGCACCGAGAGGGAATTTTAATGGCAGATTGCCGATTAATTGGAATTCTTTATGCTCGCTTAGAGTTCTCAATTTAGGGCAAAATTATATCACTGGTACCATACCCGAATCGATTCGGAAATGTGCGAATCTAACTTACTTGGATTTATCTTCGAACAAGTTTCAAGGTAACCTCCCTTCCCAGCTTCGAGTTTCATGTATGGCTTATTTCAATGTTAGCCAGAACAAAATTTCTGGTGTTCTTCCCAGATTTGAGAAAGACAGCTTTTGTACGAACTTGATTCCCATGTTCTCTGATCAGGAAGACGATTGGAATTCTTACTTGAACTTTCCTGTTTGGGATTTCACGAGACTAAAAGATAATCTCCTAATTTCTCATGATTTTAGCTGGAATAGGTTTAGTGGCTCATTAGTTTCAGTCAAAGTGGGAGAAGAGCTTTTAGCTAATGGCATTAAGTTCTCATACAAACTGCTGCTTAATAGCAACAATTTCAATGGATCACTTCCCATTGATCTGATCTCGCACTGTAACAATATGAAAGGTGTTTCGGTTAACTTGAGTTCAAACTTAGTATCAGGTGAGATATCTGATGCATTTTTTCTCCATTGTCGACAATTAATTGAGTTTGAGGCAGCAAGCAATGAATTAGATAACTCGATTGGAACTCGAATTGGTGAATTGCAGATGCTTCTTCGTCTTGACTTAAGAGGGAATAGATTGTATGGAGTTTTACCTGATCAGTTGGGGAATTTGCAAAATTTGAAATGGATGCTTTTGGGGGGAAACAATTTGACTGGAGAGATTCCATCTCGACTTAGTCGATTAACTTCTCTCTTGAGTTTAGATCTTTCTCGAAACTTGTTTACTGGCATTATCCCGGACAGCTTGTCATATGCTTCGAGACTTGAGATTCTGTTGCTTGATCATAACAGGTTAACTGGGGAAATACCAGCATCTTTCTCTGTCCTCTCACATCTCACTAAATTAGATGTGTCTTTTAACAACCTTTCTGGCCACATTCCTCGTCTTCACCACACGTTTGACTGCATTTACTTTGGTGGGAATAAGTTTCTTCATCCATGCCCAGATTCATACTCTGATTCCCCTGCTGGACTTCCGGTTCCTCTCGATGTTGAGAAGTGGAAGAGACGAAGAAAGTTTTTGTCCATGGTAATTGCTGTAGCTGCTTCCTCAACACTAATTTGCTTACTGTTAATGATAGCTGTTATCATCATCGTTAAGAGAAGGCTTGGTAAACAAAATAGGTTAAAGAAGAAACAAGTGGTGACTTTCTCAGATGCTCCTTCCGATCTGAATTATGATAATGTAGTCCGAGCTACTGAAAATTTCAGCCTTCGTTACCTAATCGGTACAGGTGGCTTCGGATCGACATACAAGGCTGAACTGCCCTCAGGTTTCCTAGTTGCTGTAAAGAGATTGTCTATTGGTAGGTTTCAAGGAGGAATTCAACAATTCGATGCAGAGATTCGAACATTGGGAAGAATACGACATAAAAACCTCGTAACTCTTCTCGGGTACTATGTTGGAGAGGCTGAAATGTTCTTAGTTTACAACTATCTTTCTGGTGGGAACCTTGAGACTTTCATCCATGAAAAATCTTGCAAACACGTAAAGCACTCAGTTATCCACAAGATCGCTTTGGATATAGCGAGAGCTCTTGCATACCTTCATTACTCCTGTGATCCTAGGATTGTTCATAGAGACATCAAACCTAGTAACATCCTGCTTGATGAAGACCACAACACCTATATATCGGATTTTGGGTTAGCAAGGCTTCTTGAGGTTTCAGAGACTCATGCCACAACAGATGTGGCAGGAACATTTGGATATGTTGCACCAGAATATGCTACAACTTGCCGGGTCTCGGATAAAGCCGATGTTTATAGCTTTGGAGTTGTTCTACTAGAGTTGCTTTCTGGAAAAAGATCGCTTGATCGATCCTTTTCCGACTTTGGGAATGGATTTAACATTGTTACATGGGCAAATATGCTGATTAAGGAAGGTCGTTCTTCTGAGCTTTTCACTCCTGAACTTCGAGAAATGGGACCTAAGGAACACTTACTTGGAATGTTAAAGCTTGCATCTAATTGCACAGTTGAAATTCTCGCTCTTCGACCGTCAATGAAGCAAGTCGTTGAGACACTGAAACAGTTGTAA 3123 40.95 MSSSLSWFIFFSLSFTFSPTAASLPDDAMSLLMFKSSISFGASDVLRGWNLSVSHCDWFGVTCDNGGTRRVVALNISGSTGGVMAEGSFLAGTLNPSIGNLVELRVLSLPNNLMYGEIPGTVGKLQSLEILELQGNNFSGEIPSQISSLPSLRLLNLSDNSVSGSIPSKLIGSAKLEVIDLSYNQLSGNIQVVGNRCGVLNHLRLSHNFLTGNIPAEIGQCWKLRTLLLDGNILEGKIPAEIGQMSELRILDVSRNSLTDSIPKELGNCRKLSQIVLTNLNDINPDNDSVRGEFNAFNGGIPSGLLLLPSLQVLWAPRGNFNGRLPINWNSLCSLRVLNLGQNYITGTIPESIRKCANLTYLDLSSNKFQGNLPSQLRVSCMAYFNVSQNKISGVLPRFEKDSFCTNLIPMFSDQEDDWNSYLNFPVWDFTRLKDNLLISHDFSWNRFSGSLVSVKVGEELLANGIKFSYKLLLNSNNFNGSLPIDLISHCNNMKGVSVNLSSNLVSGEISDAFFLHCRQLIEFEAASNELDNSIGTRIGELQMLLRLDLRGNRLYGVLPDQLGNLQNLKWMLLGGNNLTGEIPSRLSRLTSLLSLDLSRNLFTGIIPDSLSYASRLEILLLDHNRLTGEIPASFSVLSHLTKLDVSFNNLSGHIPRLHHTFDCIYFGGNKFLHPCPDSYSDSPAGLPVPLDVEKWKRRRKFLSMVIAVAASSTLICLLLMIAVIIIVKRRLGKQNRLKKKQVVTFSDAPSDLNYDNVVRATENFSLRYLIGTGGFGSTYKAELPSGFLVAVKRLSIGRFQGGIQQFDAEIRTLGRIRHKNLVTLLGYYVGEAEMFLVYNYLSGGNLETFIHEKSCKHVKHSVIHKIALDIARALAYLHYSCDPRIVHRDIKPSNILLDEDHNTYISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKRSLDRSFSDFGNGFNIVTWANMLIKEGRSSELFTPELREMGPKEHLLGMLKLASNCTVEILALRPSMKQVVETLKQL 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15949299 15952421 + MELO3C005099.2.1 Cme09g01127 337987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01127 1040 SMART serkin_6 765 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01127 1040 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 5 1040 - -
Cme09g01127 1040 ProSiteProfiles Protein kinase domain profile. 765 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01127 1040 Gene3D Ribonuclease Inhibitor 26 195 IPR032675 -
Cme09g01127 1040 SUPERFAMILY RNI-like 91 397 - -
Cme09g01127 1040 Gene3D Ribonuclease Inhibitor 419 685 IPR032675 -
Cme09g01127 1040 Gene3D Ribonuclease Inhibitor 196 290 IPR032675 -
Cme09g01127 1040 Gene3D Ribonuclease Inhibitor 291 412 IPR032675 -
Cme09g01127 1040 Gene3D Phosphorylase Kinase; domain 1 727 841 - -
Cme09g01127 1040 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 5 1040 - -
Cme09g01127 1040 ProSitePatterns Serine/Threonine protein kinases active-site signature. 886 898 IPR008271 GO:0004672|GO:0006468
Cme09g01127 1040 Gene3D Transferase(Phosphotransferase) domain 1 842 1040 - -
Cme09g01127 1040 SUPERFAMILY L domain-like 297 661 - -
Cme09g01127 1040 SUPERFAMILY Protein kinase-like (PK-like) 742 1037 IPR011009 -
Cme09g01127 1040 SMART LRR_typ_2 542 566 IPR003591 -
Cme09g01127 1040 SMART LRR_typ_2 332 356 IPR003591 -
Cme09g01127 1040 SMART LRR_typ_2 638 664 IPR003591 -
Cme09g01127 1040 SMART LRR_typ_2 125 148 IPR003591 -
Cme09g01127 1040 SMART LRR_typ_2 149 173 IPR003591 -
Cme09g01127 1040 SMART LRR_typ_2 245 269 IPR003591 -
Cme09g01127 1040 SMART LRR_typ_2 590 613 IPR003591 -
Cme09g01127 1040 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Cme09g01127 1040 Pfam Leucine rich repeat 592 651 IPR001611 GO:0005515
Cme09g01127 1040 Pfam Leucine rich repeat 127 186 IPR001611 GO:0005515
Cme09g01127 1040 Pfam Leucine rich repeat 331 369 IPR001611 GO:0005515
Cme09g01127 1040 ProSitePatterns Protein kinases ATP-binding region signature. 771 793 IPR017441 GO:0005524
Cme09g01127 1040 Pfam Protein kinase domain 770 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01197 Cme-Chr7:16317453 Cme09g01127 Cme-Chr9:15949299 0 dispersed
Cme09g01127 Cme-Chr9:15949299 Cme06g00416 Cme-Chr6:2671497 9.42E-136 dispersed
Cme09g01127 Cme-Chr9:15949299 Cme05g00654 Cme-Chr5:7055603 9.55E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65156 PF00069 Pkinase 2.10E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01127 - - csv:101202920 1909.03