Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01152 ATGTCATCCCAGCAGCAGAATTCTGATTCAAATGGCGTTTCAGGTGCCTGCCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCAAGGCTGGGACTGGAGTCGGATGCCCTCTGATTCAGAAACACAACGCTGGAATTGGAAGAAGGACCAACAGCTTTCTGGCCCCCAGAAAAGGTTGGAAGATCTGTTGCAGCAATCTGGTAATATGTTTTGTGCAGATTGCGGATCACCGGATCCAAAATGGGTATCGTTAAATTTGGGAGTGTTTATTTGTATAAAGTGCTCTGGAGTACACAGAAGTCTTGGAGTTCACATCTCTAAGGTTTTCTCAGTGAAACTAGATAATTGGACGGATGAGCAAGTCAATACTTTCACGAGCATGGGTGGAAATATAGATGTAAACAGGAAGTATGAAGCTGGCATCATCGATTTGAGCCGAAAACCGAAACCAGATTCTTGTATAGAGGAGCGCTTTGATTTTATAAGGAGAAAGTATGAACTGCTACAATTTTATAACGCCAGTAGTAGTCAAAGTTCTAGTGATAATAACTCATTTAGTAAAAGAAGTTCATCATGCCCACAAAGTAGTAACTCTTCAAGCAAGAATAGTAGCCACGACAAAAGACACTATGAGAAACAAGCTACTAGGCATCGCATTGGCCATGCATTTCGTAACAGTCGGGGAAGACGAGATGGTGACCACCACCACAAGAATTTTGAGAAGAGCAGCCTTGCAGTCTCAAGACAAGCATCGGCAGGTATGGTTGAATTTGTTGGCTTGATTAAGGTCAATGTGGTTAGAGGGACAAACCTAGCTGTCCGAGACGTGGTGACCAGCGATCCCTATGTAATTCTCTCGTTAGGGCATCAATCTGTGAGGACTCGTGTCATAAAGAACAACCTAAACCCAGTTTGGAATGAGAGCCTAATGTTGTCGATTCCTGAGCATATCCCTCCACTAAAACTGCTTGTCTATGATAAGGACACGTTTTCAACTGATGATTTTATGGGTGAAGCTGAAATTGACATTCAACCATTGGTCGCAGCGACCAAGGCGTATGAGAAGTCCACAATTGATGAATCAATGCAGTTGGGAAAATGGGTGGCAAGTAATGACAATACTTTGGTAAAAGATGGAATCATTAACCTTGTAGACGGAAAGGTCAGACAGGACATATCTCTTAGATTGCAGAATGTGGAAAGAGGTATCCTCGAGATTGAACTAGAATGCATTCCTCTTACGCAATAG 1251 42.69 MSSQQQNSDSNGVSGACLFDLLFPDSEMQGWDWSRMPSDSETQRWNWKKDQQLSGPQKRLEDLLQQSGNMFCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTFTSMGGNIDVNRKYEAGIIDLSRKPKPDSCIEERFDFIRRKYELLQFYNASSSQSSSDNNSFSKRSSSCPQSSNSSSKNSSHDKRHYEKQATRHRIGHAFRNSRGRRDGDHHHKNFEKSSLAVSRQASAGMVEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGHQSVRTRVIKNNLNPVWNESLMLSIPEHIPPLKLLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNDNTLVKDGIINLVDGKVRQDISLRLQNVERGILEIELECIPLTQ 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16169706 16184956 - MELO3C005121.2.1 Cme09g01152 338012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01152 416 Pfam Putative GTPase activating protein for Arf 58 173 IPR001164 GO:0005096
Cme09g01152 416 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 416 IPR044518 GO:0005096|GO:0005543
Cme09g01152 416 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 1 416 - -
Cme09g01152 416 MobiDBLite consensus disorder prediction 176 202 - -
Cme09g01152 416 CDD ArfGap 60 166 - -
Cme09g01152 416 ProSiteProfiles ARF GTPase-activating proteins domain profile. 57 179 IPR001164 GO:0005096
Cme09g01152 416 Pfam C2 domain 261 351 IPR000008 -
Cme09g01152 416 Gene3D Arf GTPase activating protein 38 180 IPR038508 -
Cme09g01152 416 SMART arf_gap_3 57 180 IPR001164 GO:0005096
Cme09g01152 416 PRINTS HIV Rev interacting protein signature 69 88 IPR001164 GO:0005096
Cme09g01152 416 PRINTS HIV Rev interacting protein signature 88 105 IPR001164 GO:0005096
Cme09g01152 416 PRINTS HIV Rev interacting protein signature 109 130 IPR001164 GO:0005096
Cme09g01152 416 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 351 IPR035892 -
Cme09g01152 416 MobiDBLite consensus disorder prediction 176 245 - -
Cme09g01152 416 CDD C2_ArfGAP 259 403 - -
Cme09g01152 416 Gene3D C2 domain 259 413 IPR035892 -
Cme09g01152 416 ProSiteProfiles C2 domain profile. 241 358 IPR000008 -
Cme09g01152 416 SUPERFAMILY ArfGap/RecO-like zinc finger 57 172 IPR037278 -
Cme09g01152 416 SMART C2_3c 261 356 IPR000008 -
Cme09g01152 416 MobiDBLite consensus disorder prediction 226 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01152 Cme-Chr9:16169706 Cme10g00034 Cme-Chr10:307339 3.16E-164 dispersed
Cme09g01152 Cme-Chr9:16169706 Cme02g01681 Cme-Chr2:23935345 9.59E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01152 K12486 - csv:101215531 768.844