Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01157 ATGCCAGACGTGCAAGCCCTTGTGAATGATTTCGTTATCAAGCTTAAGAAGCGGAAAATTGAGGGTTCCTTGGCCACAGCGAAGCATACGGCTGAATTGCTTCGTTCTGTCATTTCGGCGCAGCGAATACCCTACACGAATCAGGCGGCTGCTTTGATTGATGCTGTTAAAGCTGTTGGCGAGCAGCTGATTGCTGCGAATCCTGTTGAGCTTGCTGTGGGCAATATTGTGAGGCGTGTTTTGCACATTATTAGAGAGGAGGATCTTTCTCTCACCACAGCTTCTATTGCTGGGTTAAGCTTATCAGCAGTTAGTGATGATGAAGATGACATTGAAAAAGATGATCGCCCAGTCCTCTCAGCTGCTGCTGTTGCAGCTGCTGCAAGAAGCACTTTGCGGCCACCGTCCTTGCAAACTCTTCTTGAAGATGTTCCTAACCAAACATCAGTTCATCAAACTTCATCATCTGGAGGTGATTCAGAAGGAAAAAGCAAATCTGCTGATAAAAGTTCAAGGAGTCGGAAACTCAAGCATGATGTAATTGAAGCTGTTAATGAGCTTATTCAGGATATCGCAACTTGTCATGAACAGATTGCTGAGCAAGCAGTGGAGCACATTCATCAAAATGAGGTAATATTGACTTTGGGGAGTTCCAGAACAGTGTTGGAATTTCTTTGTGCTGCTAAGGAGAAGAAAAGGTCCTTCCGGGTGTTTGTTGCTGAGGGTGCTCCAAGATATCAGGGTCATCTTCTTGCTAAGGAGTTGGCTACAAGAGGTTTACAGACCACACTTATTACTGATTCTGCGGTTTTTGCCATGATTTCACGGGTGAATATGGTAATAGTTGGAGCTCATGCTGTCATGGCAAATGGTGGTGTCATGGCACCAGTCGGATTGAATATGGTGGCCCTTGCAGCTAAAAGGCATGCTGTTCCTTTTGTTGTGCTAGCCGGAAGTCACAAGTTATGCCCTCTGTATCCTCACAATCCCGAAGTTCTACTCAATGAACTGAGGTCACCGTCAGAGCTACTGGACTTTGGTGAATTTTCAGATTGCATGGACTTTGGAACTTGCCCTGGTTCTCCTCTTCTCCATGTAGTCAATCCTACGTTTGACTATGTGCCACCCTCGCTTGTTAGTTTATTTATTACTGACACTGGTGGCCATAACTCATCCTACATGTATCGGCTTATTGCTGATTATTATTCAGCTGATGATTTGGTAATCAAAAGGTCTTCCACTGGCAGCTGA 1251 45.0 MPDVQALVNDFVIKLKKRKIEGSLATAKHTAELLRSVISAQRIPYTNQAAALIDAVKAVGEQLIAANPVELAVGNIVRRVLHIIREEDLSLTTASIAGLSLSAVSDDEDDIEKDDRPVLSAAAVAAAARSTLRPPSLQTLLEDVPNQTSVHQTSSSGGDSEGKSKSADKSSRSRKLKHDVIEAVNELIQDIATCHEQIAEQAVEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKELATRGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVMAPVGLNMVALAAKRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCMDFGTCPGSPLLHVVNPTFDYVPPSLVSLFITDTGGHNSSYMYRLIADYYSADDLVIKRSSTGS 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16221802 16241443 - MELO3C005125.2.1 Cme09g01157 338017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01157 416 Pfam Initiation factor 2 subunit family 165 389 IPR000649 GO:0044237
Cme09g01157 416 Pfam Initiation factor 2 subunit family 19 122 IPR000649 GO:0044237
Cme09g01157 416 SUPERFAMILY NagB/RpiA/CoA transferase-like 7 406 IPR037171 -
Cme09g01157 416 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 54 409 - -
Cme09g01157 416 MobiDBLite consensus disorder prediction 162 176 - -
Cme09g01157 416 MobiDBLite consensus disorder prediction 142 161 - -
Cme09g01157 416 PANTHER BNAA01G32370D PROTEIN 54 409 - -
Cme09g01157 416 MobiDBLite consensus disorder prediction 142 176 - -
Cme09g01157 416 Gene3D - 194 401 IPR042529 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02763 Cme-Chr1:34740775 Cme09g01157 Cme-Chr9:16221802 9.03E-23 dispersed
Cme02g00312 Cme-Chr2:2577044 Cme09g01157 Cme-Chr9:16221802 2.45E-15 dispersed
Cme02g01772 Cme-Chr2:24610194 Cme09g01157 Cme-Chr9:16221802 7.20E-19 dispersed
Cme02g01773 Cme-Chr2:24617706 Cme09g01157 Cme-Chr9:16221802 1.05E-17 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01157 K03754 - csv:101220366 763.837