Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01191 ATGGTTGTTGCTCTTGAATCCACCCCTTTCCACGTTCTTGCTGTTGATGATAGCTTCATCGATCGCAAATTGATCGAACGCCTCCTCAAAACCTCTTCCTATCATGTTACTGCTGTTGATTCCGGCACTAAGGCCTTGGAATTTCTCGGTCTTGTTCAAGATCACGATCAACAAACTGACTCCAAAATCGCTCCTGAAAATCATCATCATCAAGAAGTGGATGTAAATTTAATCATCACGGATTACAGTATGCCTGGAATGAGTGGCTACGAACTCCTCAGAAAAATCAAGGAATCGAAATCTCTTAAAGACATACCGGTTGTGATTATGTCATCTGAGAATGTTCCTTCAAGAATCAACAGATGCTTGGAAGAAGGAGCGGAAGAATTCTTCCTCAAACCAGTTCAATTATCCGATGTCAGGAAATTGAGACCTCATTTGATTAAAGAAAAATCCACAAACAATTGA 468 40.38 MVVALESTPFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVQDHDQQTDSKIAPENHHHQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTNN 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16670479 16671579 - MELO3C005156.2.1 Cme09g01191 338051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01191 155 CDD REC_typeA_ARR 12 143 - -
Cme09g01191 155 SUPERFAMILY CheY-like 9 143 IPR011006 -
Cme09g01191 155 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 3 153 - -
Cme09g01191 155 ProSiteProfiles Response regulatory domain profile. 11 148 IPR001789 GO:0000160
Cme09g01191 155 SMART REC_2 10 144 IPR001789 GO:0000160
Cme09g01191 155 Pfam Response regulator receiver domain 12 142 IPR001789 GO:0000160
Cme09g01191 155 Gene3D - 11 154 - -
Cme09g01191 155 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 153 IPR045279 GO:0009736
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01191 K14492 ARR-A; two-component response regulator ARR-A family - csv:101210839 297.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00540 Cme-Chr3:8082730 Cme09g01191 Cme-Chr9:16670479 2.22E-58 dispersed
Cme08g01358 Cme-Chr8:10713711 Cme09g01191 Cme-Chr9:16670479 1.20E-69 dispersed
Cme09g01191 Cme-Chr9:16670479 Cme10g00026 Cme-Chr10:275521 1.55E-61 dispersed
Cme09g01191 Cme-Chr9:16670479 Cme10g00486 Cme-Chr10:3124244 6.21E-56 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g00108 . 52 346 Response Regulator Gene Family AT3G16857 50.8 7.0e-61 232.3
Cme03g02198 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cme05g01902 . 59 316 Response Regulator Gene Family AT3G16857 51.8 5.9e-52 202.6
Cme02g01081 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.4e-91 332.4
Cme07g00108 . 1 413 Response Regulator Gene Family AT4G31920 52.0 5.4e-89 325.5
Cme05g01902 . 13 340 Response Regulator Gene Family AT4G31920 55.1 1.5e-78 290.8
Cme06g00764 . 16 270 Response Regulator Gene Family AT4G31920 53.8 1.6e-69 260.8
Cme03g02198 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.3e-62 236.1
Cme06g00764 . 99 261 Response Regulator Gene Family AT1G67710 53.3 5.4e-39 159.1
Cme07g00108 . 93 255 Response Regulator Gene Family AT1G67710 50.9 1.5e-36 151.0
Cme02g01081 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.2e-102 370.9
Cme06g00764 . 18 290 Response Regulator Gene Family AT2G25180 55.4 4.6e-78 289.3
Cme03g02198 . 11 256 Response Regulator Gene Family AT2G25180 55.6 8.7e-69 258.5
Cme11g02055 . 1 174 Response Regulator Gene Family AT2G25180 52.0 3.2e-39 160.2
Cme06g00764 . 79 308 Response Regulator Gene Family AT2G01760 50.4 3.6e-53 205.7
Cme02g01081 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.2e-50 194.5
Cme03g02198 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.5e-48 189.1
Cme03g02198 . 9 258 Response Regulator Gene Family AT5G58080 50.6 6.4e-62 235.7
Cme06g00764 . 18 241 Response Regulator Gene Family AT4G16110 66.5 3.0e-78 290.0
Cme07g00108 . 12 233 Response Regulator Gene Family AT4G16110 65.8 1.5e-61 234.6
Cme03g02198 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.1e-59 225.3
Cme02g01081 . 17 249 Response Regulator Gene Family AT4G16110 53.4 8.5e-57 218.8
Cme05g01902 . 12 266 Response Regulator Gene Family AT4G16110 52.6 1.8e-51 201.1
Cme11g02055 . 1 141 Response Regulator Gene Family AT4G16110 56.4 2.8e-36 150.6
Cme02g01933 . 31 189 Response Regulator Gene Family AT3G48100 68.8 6.0e-53 204.1
Cme10g00486 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.7e-51 197.6
Cme09g01191 . 11 149 Response Regulator Gene Family AT3G48100 60.4 1.5e-40 162.9
Cme08g01358 CCT 77 216 Response Regulator Gene Family AT3G48100 58.6 1.3e-39 159.8
Cme10g00486 . 1 175 Response Regulator Gene Family AT1G59940 65.4 2.7e-56 216.1
Cme02g01933 . 10 159 Response Regulator Gene Family AT1G59940 62.9 5.1e-47 185.3
Cme09g01191 . 5 150 Response Regulator Gene Family AT1G59940 61.6 5.4e-41 165.2
Cme10g00486 . 16 185 Response Regulator Gene Family AT1G10470 66.5 1.9e-54 209.5
Cme02g01933 . 30 168 Response Regulator Gene Family AT1G10470 67.6 5.6e-46 181.4
Cme09g01191 . 5 155 Response Regulator Gene Family AT1G10470 57.7 1.0e-39 160.6
Cme08g01358 CCT 77 214 Response Regulator Gene Family AT1G10470 60.1 1.9e-38 156.4
Cme02g01933 . 31 189 Response Regulator Gene Family AT3G48100 68.8 6.0e-53 204.1
Cme10g00486 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.7e-51 197.6
Cme09g01191 . 11 149 Response Regulator Gene Family AT3G48100 60.4 1.5e-40 162.9
Cme08g01358 CCT 77 216 Response Regulator Gene Family AT3G48100 58.6 1.3e-39 159.8
Cme02g01933 . 31 164 Response Regulator Gene Family AT5G62920 77.6 7.5e-51 197.2
Cme10g00486 . 11 175 Response Regulator Gene Family AT5G62920 64.2 1.1e-49 193.4
Cme09g01191 . 9 149 Response Regulator Gene Family AT5G62920 59.6 4.1e-41 164.9
Cme08g01358 CCT 77 216 Response Regulator Gene Family AT5G62920 58.6 2.9e-39 158.7
Cme02g01933 . 30 163 Response Regulator Gene Family AT1G19050 75.4 5.4e-50 194.5
Cme10g00486 . 28 185 Response Regulator Gene Family AT1G19050 60.4 1.2e-44 176.8
Cme08g01358 CCT 75 216 Response Regulator Gene Family AT1G19050 56.3 9.5e-39 157.1
Cme09g01191 . 7 152 Response Regulator Gene Family AT1G19050 54.4 4.0e-37 151.8
Cme08g01358 CCT 68 320 Response Regulator Gene Family AT2G41310 53.8 8.1e-60 227.3
Cme04g02093 CCT 1 181 Response Regulator Gene Family AT2G41310 63.5 5.6e-53 204.5
Cme09g01191 . 1 151 Response Regulator Gene Family AT2G41310 65.6 6.5e-49 191.0
Cme03g00540 . 12 160 Response Regulator Gene Family AT2G41310 60.7 2.8e-44 175.6
Cme10g00486 . 25 158 Response Regulator Gene Family AT2G41310 58.9 2.9e-41 165.6
Cme02g01933 . 29 160 Response Regulator Gene Family AT2G41310 62.6 5.0e-41 164.9
Cme10g00026 . 105 264 Response Regulator Gene Family AT2G41310 58.2 8.5e-41 164.1
Cme08g01358 CCT 68 320 Response Regulator Gene Family AT3G57040 54.5 7.4e-64 240.7
Cme04g02093 CCT 1 179 Response Regulator Gene Family AT3G57040 66.5 6.9e-54 207.6
Cme09g01191 . 1 154 Response Regulator Gene Family AT3G57040 66.2 9.4e-51 197.2
Cme03g00540 . 19 189 Response Regulator Gene Family AT3G57040 55.7 7.7e-45 177.6
Cme10g00486 . 25 158 Response Regulator Gene Family AT3G57040 59.4 3.2e-43 172.2
Cme02g01933 . 26 160 Response Regulator Gene Family AT3G57040 61.8 1.4e-41 166.8
Cme10g00026 . 110 264 Response Regulator Gene Family AT3G57040 60.0 2.3e-41 166.0
Cme02g01933 . 25 183 Response Regulator Gene Family AT1G74890 69.9 1.2e-52 203.4
Cme10g00486 . 25 187 Response Regulator Gene Family AT1G74890 61.8 2.5e-47 185.7
Cme08g01358 CCT 75 209 Response Regulator Gene Family AT1G74890 60.0 4.3e-39 158.3
Cme09g01191 . 7 144 Response Regulator Gene Family AT1G74890 58.7 5.6e-39 157.9
Cme10g00486 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.5e-39 159.5
Cme02g01933 . 30 161 Response Regulator Gene Family AT2G40670 59.3 1.4e-37 152.9
Cme10g00486 . 26 159 Response Regulator Gene Family AT3G56380 54.8 2.9e-40 161.8
Cme02g01933 . 25 161 Response Regulator Gene Family AT3G56380 59.4 3.8e-40 161.4
Cme09g01191 . 11 152 Response Regulator Gene Family AT3G56380 57.3 4.6e-38 154.5
Cme07g00108 . 52 346 Response Regulator Gene Family AT3G16857 50.8 7.0e-61 232.3
Cme03g02198 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cme05g01902 . 59 316 Response Regulator Gene Family AT3G16857 51.8 5.9e-52 202.6
Cme06g00764 . 18 241 Response Regulator Gene Family AT4G16110 66.5 3.0e-78 290.0
Cme07g00108 . 12 233 Response Regulator Gene Family AT4G16110 65.8 1.5e-61 234.6
Cme03g02198 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.1e-59 225.3
Cme02g01081 . 17 249 Response Regulator Gene Family AT4G16110 53.4 8.5e-57 218.8
Cme05g01902 . 12 266 Response Regulator Gene Family AT4G16110 52.6 1.8e-51 201.1
Cme11g02055 . 1 141 Response Regulator Gene Family AT4G16110 56.4 2.8e-36 150.6
Cme02g01081 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.4e-91 332.4
Cme07g00108 . 1 413 Response Regulator Gene Family AT4G31920 52.0 5.4e-89 325.5
Cme05g01902 . 13 340 Response Regulator Gene Family AT4G31920 55.1 1.5e-78 290.8
Cme06g00764 . 16 270 Response Regulator Gene Family AT4G31920 53.8 1.6e-69 260.8
Cme03g02198 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.3e-62 236.1
Cme06g00764 . 99 261 Response Regulator Gene Family AT1G67710 53.3 5.4e-39 159.1
Cme07g00108 . 93 255 Response Regulator Gene Family AT1G67710 50.9 1.5e-36 151.0
Cme02g01081 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.2e-102 370.9
Cme06g00764 . 18 290 Response Regulator Gene Family AT2G25180 55.4 4.6e-78 289.3
Cme03g02198 . 11 256 Response Regulator Gene Family AT2G25180 55.6 8.7e-69 258.5
Cme11g02055 . 1 174 Response Regulator Gene Family AT2G25180 52.0 3.2e-39 160.2
Cme06g00764 . 79 308 Response Regulator Gene Family AT2G01760 50.4 3.6e-53 205.7
Cme02g01081 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.2e-50 194.5
Cme03g02198 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.5e-48 189.1
Cme03g02198 . 9 258 Response Regulator Gene Family AT5G58080 50.6 6.4e-62 235.7
Cme12g01975 . 6 555 Response Regulator Gene Family AT5G61380 51.2 8.5e-144 507.7
Cme08g02346 . 38 206 Response Regulator Gene Family AT5G60100 68.6 9.9e-56 214.5
Cme08g02346 . 67 206 Response Regulator Gene Family AT5G24470 55.7 3.9e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000219 2 6 2 4 4 5 9 5 5 3 5 5 8 5 5 8 5 6 7 5 5 5 6 6 6 5 4 13 7 2 163
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41951 PF00072 Response_reg 4.40E-21 CL0304 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g01191 Cme_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0