Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme09g01202 | ATGGAAATTATAGGAAAAACTGGGTTACTGTTTTGTCTGGCTTTGCTTTGGTTATGGGCTTTTTCAAGTGAGGCTTCAACAAGCAAAGACGATTCGACTGCTGAAGTTCAAGCTTTGATGGGGATCAAAGCTGGTTTGAAGGATCCTCATTCTGTTCTGATTTGGGATGAAAATGCTGTGGATGCATGTACTTGGAATTTCATCACTTGCTCTCCTGATAAACTGGTCATTGGCATAGGAGCTCCAAGCCAAAACTTTTCTGGTACACTCTCACCAAGTATTGCAAATTTGACAAATCTTCAATTTTTGCTTCTTCAGAATAACAATATATCAGGAAAAATCCCCAAAGAGATTACCAAAATACCAAAACTTCACACACTTGATCTTTCAAACAACTCGTTCTCTGGTGAAATTCCCAGCTCTTTTTCCAATATGAAAAGCCTTCAATACCTGCGACTCAACAATAACACCTTATCAGGGCCAATCCCAACATCACTGGCTAACATGACCCAGCTTACCCTGCTGGACTTGTCCTATAATAACTTGAGCAGTCCTGCGCCCAGATTGCTGGCTAAGACATTTAACTTTACTGGAAACTCTTTGATTTGTTCCCCTGGAATCAAGGAAGTATGCTATGGAACAACTCCGTTGCCACTTTCTTTTGCCGTTCCTAATTCCACATATTCTCAACCTCCTAGGAGACACAGTGGCCAGAGAATTGCTTTAGTTATTGGTCTCAGCTTAAGCTGCATCTGTCTGTTCACTCTTGCATATGATTGGCATCGGGATGATCATAGCCTAGGGAACATAAAGAGGTTTCAGTTCAGAGAACTTCAGAATGCTACTCACAATTTCAGCAGTAAAAACTTGGTTGGAAAAGGTGGTTTTGGAAATGTATACAGAGGATATCTACAAGACGGCACCATTGTAGCTGTAAAGAGACTCAAAGATGGAAATGCTATGAGAGGAGAGATTCAGTTTCAGACTGAAGTTGAAATGATAAGCTTGGCAGTGCATAGGAACCTTCTCAGGTTATATGGTTTCTGTATGACAGAAACCGAAAGGCTTTTGGTCTATCCATACATGTCCAATGGCAGTGTCGCTACCCGTCTTAAAGCAAAACCCGCTCTGGATTGGGGTACAAGGAAGAGAATTGCATTGGGAGCTGCTAGGGGATTGTTATACCTACATGAACAGTGTGATCCAAAAATAATTCATAGGGATGTGAAAGCTGCAAATATACTTCTTGATGATTTCTGTGAGGCAGTGGTGGGTGATTTTGGGCTTGCAAAGCTGTTAGATCACAGAGATTCACATGTCACTACTGCAGTGAGGGGAACTGTTGGGCACATTGCACCAGAGTATCTATCAACAGGCCAATCCTCAGAGAAAACAGATGTTTTCGGGTTCGGAATTCTACTTCTTGAGCTCATATCAGGTCAAAGAGCTCTTGAGTTTGGTAAAGCAGCAAACCAAAAGGGTGCAATACTGGACTGGGTAAAGAAGATACACCAAGAAAAGAAGCTTGAAATGCTTGTTGACAAAGACTTGAGAAGTAATTACGACCGAATCGAACTTGAAGAAATTGTTCGAGTTGCTCTCCTGTGCATTCAATATCTTCCAAGCCATAGGCCTAAGATGTCTGAAGTGGTCAGGATGCTTGAAGGAGATGGGCTTGCTGAGAAATGGGAAGCTTCTCAAAGAGCAGAAGCAAGCAGGAGCAGAGCCAATGAGTTCTCTTCCGAACGTTACTCCGATCTTACTGATGACTCTTCATTGTTTGCTCAAGCGATAGAGCTCTCGGGACCGAGATAA | 1815 | 42.31 | MEIIGKTGLLFCLALLWLWAFSSEASTSKDDSTAEVQALMGIKAGLKDPHSVLIWDENAVDACTWNFITCSPDKLVIGIGAPSQNFSGTLSPSIANLTNLQFLLLQNNNISGKIPKEITKIPKLHTLDLSNNSFSGEIPSSFSNMKSLQYLRLNNNTLSGPIPTSLANMTQLTLLDLSYNNLSSPAPRLLAKTFNFTGNSLICSPGIKEVCYGTTPLPLSFAVPNSTYSQPPRRHSGQRIALVIGLSLSCICLFTLAYDWHRDDHSLGNIKRFQFRELQNATHNFSSKNLVGKGGFGNVYRGYLQDGTIVAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTETERLLVYPYMSNGSVATRLKAKPALDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAILDWVKKIHQEKKLEMLVDKDLRSNYDRIELEEIVRVALLCIQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAEASRSRANEFSSERYSDLTDDSSLFAQAIELSGPR | 604 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 16940827 | 16944580 | + | MELO3C005170.2.1 | Cme09g01202 | 338062 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme09g01202 | 604 | PANTHER | PROTEIN NSP-INTERACTING KINASE 2-LIKE | 11 | 604 | - | - | |
Cme09g01202 | 604 | Gene3D | Transferase(Phosphotransferase) domain 1 | 362 | 574 | - | - | |
Cme09g01202 | 604 | ProSiteProfiles | Protein kinase domain profile. | 285 | 564 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme09g01202 | 604 | Gene3D | Ribonuclease Inhibitor | 32 | 213 | IPR032675 | - | |
Cme09g01202 | 604 | SUPERFAMILY | L domain-like | 35 | 204 | - | - | |
Cme09g01202 | 604 | MobiDBLite | consensus disorder prediction | 567 | 586 | - | - | |
Cme09g01202 | 604 | Pfam | Leucine rich repeat | 122 | 182 | IPR001611 | GO:0005515 | |
Cme09g01202 | 604 | Pfam | Leucine rich repeat N-terminal domain | 34 | 71 | IPR013210 | - | |
Cme09g01202 | 604 | Gene3D | Phosphorylase Kinase; domain 1 | 258 | 361 | - | - | |
Cme09g01202 | 604 | ProSitePatterns | Protein kinases ATP-binding region signature. | 291 | 313 | IPR017441 | GO:0005524 | |
Cme09g01202 | 604 | MobiDBLite | consensus disorder prediction | 567 | 585 | - | - | |
Cme09g01202 | 604 | SUPERFAMILY | Protein kinase-like (PK-like) | 265 | 555 | IPR011009 | - | |
Cme09g01202 | 604 | Pfam | Protein kinase domain | 286 | 552 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme09g01202 | 604 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 11 | 604 | - | - | |
Cme09g01202 | 604 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 404 | 416 | IPR008271 | GO:0004672|GO:0006468 | |
Cme09g01202 | 604 | SMART | serkin_6 | 285 | 554 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme09g01202 | Cme-Chr9:16940827 | Cme10g00319 | Cme-Chr10:2096713 | 0 | dispersed | |
Cme11g01809 | Cme-Chr11:26269690 | Cme09g01202 | Cme-Chr9:16940827 | 2.09E-12 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65157 | PF00069 | Pkinase | 4.10E-44 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme09g01202 | - | - | csv:101222667 | 1112.06 |