Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01202 ATGGAAATTATAGGAAAAACTGGGTTACTGTTTTGTCTGGCTTTGCTTTGGTTATGGGCTTTTTCAAGTGAGGCTTCAACAAGCAAAGACGATTCGACTGCTGAAGTTCAAGCTTTGATGGGGATCAAAGCTGGTTTGAAGGATCCTCATTCTGTTCTGATTTGGGATGAAAATGCTGTGGATGCATGTACTTGGAATTTCATCACTTGCTCTCCTGATAAACTGGTCATTGGCATAGGAGCTCCAAGCCAAAACTTTTCTGGTACACTCTCACCAAGTATTGCAAATTTGACAAATCTTCAATTTTTGCTTCTTCAGAATAACAATATATCAGGAAAAATCCCCAAAGAGATTACCAAAATACCAAAACTTCACACACTTGATCTTTCAAACAACTCGTTCTCTGGTGAAATTCCCAGCTCTTTTTCCAATATGAAAAGCCTTCAATACCTGCGACTCAACAATAACACCTTATCAGGGCCAATCCCAACATCACTGGCTAACATGACCCAGCTTACCCTGCTGGACTTGTCCTATAATAACTTGAGCAGTCCTGCGCCCAGATTGCTGGCTAAGACATTTAACTTTACTGGAAACTCTTTGATTTGTTCCCCTGGAATCAAGGAAGTATGCTATGGAACAACTCCGTTGCCACTTTCTTTTGCCGTTCCTAATTCCACATATTCTCAACCTCCTAGGAGACACAGTGGCCAGAGAATTGCTTTAGTTATTGGTCTCAGCTTAAGCTGCATCTGTCTGTTCACTCTTGCATATGATTGGCATCGGGATGATCATAGCCTAGGGAACATAAAGAGGTTTCAGTTCAGAGAACTTCAGAATGCTACTCACAATTTCAGCAGTAAAAACTTGGTTGGAAAAGGTGGTTTTGGAAATGTATACAGAGGATATCTACAAGACGGCACCATTGTAGCTGTAAAGAGACTCAAAGATGGAAATGCTATGAGAGGAGAGATTCAGTTTCAGACTGAAGTTGAAATGATAAGCTTGGCAGTGCATAGGAACCTTCTCAGGTTATATGGTTTCTGTATGACAGAAACCGAAAGGCTTTTGGTCTATCCATACATGTCCAATGGCAGTGTCGCTACCCGTCTTAAAGCAAAACCCGCTCTGGATTGGGGTACAAGGAAGAGAATTGCATTGGGAGCTGCTAGGGGATTGTTATACCTACATGAACAGTGTGATCCAAAAATAATTCATAGGGATGTGAAAGCTGCAAATATACTTCTTGATGATTTCTGTGAGGCAGTGGTGGGTGATTTTGGGCTTGCAAAGCTGTTAGATCACAGAGATTCACATGTCACTACTGCAGTGAGGGGAACTGTTGGGCACATTGCACCAGAGTATCTATCAACAGGCCAATCCTCAGAGAAAACAGATGTTTTCGGGTTCGGAATTCTACTTCTTGAGCTCATATCAGGTCAAAGAGCTCTTGAGTTTGGTAAAGCAGCAAACCAAAAGGGTGCAATACTGGACTGGGTAAAGAAGATACACCAAGAAAAGAAGCTTGAAATGCTTGTTGACAAAGACTTGAGAAGTAATTACGACCGAATCGAACTTGAAGAAATTGTTCGAGTTGCTCTCCTGTGCATTCAATATCTTCCAAGCCATAGGCCTAAGATGTCTGAAGTGGTCAGGATGCTTGAAGGAGATGGGCTTGCTGAGAAATGGGAAGCTTCTCAAAGAGCAGAAGCAAGCAGGAGCAGAGCCAATGAGTTCTCTTCCGAACGTTACTCCGATCTTACTGATGACTCTTCATTGTTTGCTCAAGCGATAGAGCTCTCGGGACCGAGATAA 1815 42.31 MEIIGKTGLLFCLALLWLWAFSSEASTSKDDSTAEVQALMGIKAGLKDPHSVLIWDENAVDACTWNFITCSPDKLVIGIGAPSQNFSGTLSPSIANLTNLQFLLLQNNNISGKIPKEITKIPKLHTLDLSNNSFSGEIPSSFSNMKSLQYLRLNNNTLSGPIPTSLANMTQLTLLDLSYNNLSSPAPRLLAKTFNFTGNSLICSPGIKEVCYGTTPLPLSFAVPNSTYSQPPRRHSGQRIALVIGLSLSCICLFTLAYDWHRDDHSLGNIKRFQFRELQNATHNFSSKNLVGKGGFGNVYRGYLQDGTIVAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTETERLLVYPYMSNGSVATRLKAKPALDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAILDWVKKIHQEKKLEMLVDKDLRSNYDRIELEEIVRVALLCIQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAEASRSRANEFSSERYSDLTDDSSLFAQAIELSGPR 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16940827 16944580 + MELO3C005170.2.1 Cme09g01202 338062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01202 604 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 11 604 - -
Cme09g01202 604 Gene3D Transferase(Phosphotransferase) domain 1 362 574 - -
Cme09g01202 604 ProSiteProfiles Protein kinase domain profile. 285 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01202 604 Gene3D Ribonuclease Inhibitor 32 213 IPR032675 -
Cme09g01202 604 SUPERFAMILY L domain-like 35 204 - -
Cme09g01202 604 MobiDBLite consensus disorder prediction 567 586 - -
Cme09g01202 604 Pfam Leucine rich repeat 122 182 IPR001611 GO:0005515
Cme09g01202 604 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Cme09g01202 604 Gene3D Phosphorylase Kinase; domain 1 258 361 - -
Cme09g01202 604 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524
Cme09g01202 604 MobiDBLite consensus disorder prediction 567 585 - -
Cme09g01202 604 SUPERFAMILY Protein kinase-like (PK-like) 265 555 IPR011009 -
Cme09g01202 604 Pfam Protein kinase domain 286 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01202 604 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 604 - -
Cme09g01202 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
Cme09g01202 604 SMART serkin_6 285 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01202 Cme-Chr9:16940827 Cme10g00319 Cme-Chr10:2096713 0 dispersed
Cme11g01809 Cme-Chr11:26269690 Cme09g01202 Cme-Chr9:16940827 2.09E-12 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65157 PF00069 Pkinase 4.10E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01202 - - csv:101222667 1112.06