Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01240 ATGAAGAGGACGGGAAGTACACTAGTGCCGCAGATTTTCTTCAACGACAAGCTCTTTGGGGGTCTTGTAGCCTTAAACTCCCTAAGAAACAGCGGCGAATTTGACCGGAGAATCAAAGATATGCTCAGCCATAAATGTCCCGACGACGCACCGGCTCCGCCAGTATACGGTTTCGACGACCCAGATGAAGGATCGCCGGACGAACTACTTGAGATCGTGAAATTTCTGAGACAGAGATTGCCGATTCAGGACCGTCTAATCAAAATGAAGATCGTCAAGAACTGCTTCTCCGGCAGCGAAATGGTGGAAGCGCTTATTCACCGCCTTGACTGCGGCCGTAGAAAGGCTGTTGAAATTGGAAAGCAGATGGCCCAGAAGCTCTTTATCCATCACGTCTTTGGGGAAAATGAATTTGAAGATGGGAATCACTTCTATAGATTCCTTGAGCATGGGCCATTTATATCTCGTTGCTTCAATTTCAGGGGCTCAGTTAATGACAATGAGCCCAAGCCCGCTGCCATTGTTGCACAAAAGCTCGCCAAGATCATGTCCGCCATTTTAGAATCTTATGCCTCTGAAGATCTCCAACATATTGATTATCTCACCATTAGCAACACTGAAGAATTTCGAAGGTACATAAATGTAATAGAAGACCTTCACCGCGTGAACCTCTTGGAACTATCACAAAATGAAAAATTAGCTTTTTTCCTAAACCTTTACAATGCTATGGTGATTCATGGGTTGATAAGATTTGGACGACTAGAGGGTGTAATTGACAGAAAATCCTTCTTCTCGGATTTCCAATACTTGGTCGGTGGACACCCATATTCACTTATAGCCATAAAGAATGGGATTCTCAGAGGCAATAGGAGGCCACCTTATTCCTTTGTTAAGCCCTTCAGCAGTTCTGACAAGCGATTGGAGCTTGCTTATGGGGAAGTGAATCCATTAATTCACTTTGGACTGTGCAATGGCACAAAGTCAAGCCCAAGAGTGAGATTCTATACTCCTCAAGGAGTAGAAGCAGAGCTAAGATGCGCCGCAAGAGAATTCTTTCAAAGTGGAGGAGTGGAGGTTGACTTGGACAAAAGAACTGTTTATCTCACTGGAATCATCAAGTGGTTTGTCACCTAA 1134 44.44 MKRTGSTLVPQIFFNDKLFGGLVALNSLRNSGEFDRRIKDMLSHKCPDDAPAPPVYGFDDPDEGSPDELLEIVKFLRQRLPIQDRLIKMKIVKNCFSGSEMVEALIHRLDCGRRKAVEIGKQMAQKLFIHHVFGENEFEDGNHFYRFLEHGPFISRCFNFRGSVNDNEPKPAAIVAQKLAKIMSAILESYASEDLQHIDYLTISNTEEFRRYINVIEDLHRVNLLELSQNEKLAFFLNLYNAMVIHGLIRFGRLEGVIDRKSFFSDFQYLVGGHPYSLIAIKNGILRGNRRPPYSFVKPFSSSDKRLELAYGEVNPLIHFGLCNGTKSSPRVRFYTPQGVEAELRCAAREFFQSGGVEVDLDKRTVYLTGIIKWFVT 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17317288 17323825 + MELO3C005206.2.1 Cme09g01240 338100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01240 377 ProSiteProfiles DEP domain profile. 76 149 IPR000591 GO:0035556
Cme09g01240 377 Pfam Protein of unknown function, DUF547 226 351 IPR006869 -
Cme09g01240 377 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 80 147 IPR000591 GO:0035556
Cme09g01240 377 Gene3D Glutaredoxin 1 47 - -
Cme09g01240 377 PANTHER F26K24.21 PROTEIN 1 375 - -
Cme09g01240 377 SMART DEP_3 76 149 IPR000591 GO:0035556
Cme09g01240 377 Gene3D - 67 198 IPR036388 -
Cme09g01240 377 SUPERFAMILY Winged helix DNA-binding domain 67 170 IPR036390 -
Cme09g01240 377 CDD DEP 68 146 - -
Cme09g01240 377 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 1 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01240 - - - csv:101218879 752.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00066 Cme-Chr3:907207 Cme09g01240 Cme-Chr9:17317288 7.20E-108 dispersed
Cme09g01240 Cme-Chr9:17317288 Cme12g00418 Cme-Chr12:6230816 5.18E-15 dispersed
Cme09g01240 Cme-Chr9:17317288 Cme11g00312 Cme-Chr11:3294283 1.50E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1073 . . . . . . Bma14g01625 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0665 Cone19ag0662 . . . . . . . . Bda07g01448 . Bpe11g01619 . . . . . Cmo15g00895 . Cma15g00860 . Car15g00811 . . . . . . . . . . . . . . . . . . Chy09g00445 Cme09g01240
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007007 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g01240 Cme_Chr09 FPKM 0.0 0.0 2.223246 2.619207 3.140429 3.389239 3.410935 0.0 0.0 0.0