Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01267 ATGGTTTTCTCCAAAACTTTCTCCGAATCCGATGTTTCCATACACTCCACTTTCGCCTCTCGCTACGTTCGGGACTCCGCTCCTCGCTTCACCATGCCCGATAACTCCATGCCCAAGGAAGCCGCCTTCCAAATCATCAACGACGAGCTCATGCTCGACGGCAACCCCAGGCTCAATCTAGCCTCCTTCGTCACCACTTGGATGGAGCCCGAATGTGATAAGCTCATTATGGACTCTGTCAATAAAAACTACGTCGACATGGACGAATACCCCGTCACTACCGAGCTTCAAAACCGTTGTGTCAACATGATTGCACATCTCTTTAATGCACCCTTAGGAGACTCTGACACCGCGGTTGGTGTCGGGACGGTGGGCTCGTCGGAGGCCATCATGTTGGCAGGGCTTGCCTTCAAGAGGAAGTGGCAGAACAAAAGGAAGGCGGAAGGGAAGCCTTATGACAAACCAAATATTGTGACGGGTGCTAATGTGCAAGTTTGTTGGGAGAAATTTGCAAGATACTTTGAGGTTGAGTTGAAGGAAGTTAAGGTGAGAGAAGGTTATTACGTGATGGACCCTGTTCAAGCCGCTGAGATGGTGGATGAGAACACTATTTGTGTTGCTGCCATTTTGGGGTCAACTTACAATGGAGAATTTGAAGACGTGAAGCTGTTGAACGATTTGCTGGTGGAGAAGAATAAGGTAAGTGGATGGGATACGCCTATTCATGTGGATGCTGCCAGTGGTGGATTCATAGCCCCATTTTTGTATCCAGAGCTTGAATGGGACTTCAGGCTTCCTTTGGTGAAGAGTATCAATGTGAGTGGCCATAAGTATGGGCTTGTCTATGCTGGAATTGGTTGGGTGATCTGGAGAACCAAAGAAGATTTGCCTGAAGAACTCATTTTCCACATCAATTACCTTGGAGCGGATCAACCCACTTTCACTCTCAACTTCTCCAAAGGATCAAGCCAAATCATTGCTCAATATTATCAACTAATCCGGTTGGGTTACGAGGGATACCGAAATGTGATGCAGAATTGTCACGACAATGCAATGGTGTTGAAGGAAGGGCTTGAAAACACAGGGAGGTTCACCATAGTGTCAAAGGACATGGGAGTGCCAGTAGTGGCATTTTCCCTCAAAGACCGAAGCCGCCACGATGAGTTTGAGGTGTCAGAGATGTTGAGGCGATTCGGGTGGATTGTCCCGGCTTATCCAATGCCAGAGGGAGCGAAGCACGTGTCGGTTCTTCGTGTGGTGATTAGAGAAGATTTCTCTCGCACGCTCGCGGAGAGACTTGTGCTCGATATCATAAAGGTATTGGCAGAGCTAGACACTCTTCCACCAAAGAAGAGTGAAAAAATGGAGAGCTTGGAGAATGGTAAAACGGAAACGAGTGGGAAGAAGAGTGCAGAGGAGACAGAGAGGGAAATAGCAACTTATTGGAGGAATATAACGAATGCTAGGAAAATCAAGCTTGCTGCTACTATGGCTGGTCCTTCAGTTACGGTAGTTGCCAAATAA 1524 47.57 MVFSKTFSESDVSIHSTFASRYVRDSAPRFTMPDNSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVQAAEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKVSGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGYEGYRNVMQNCHDNAMVLKEGLENTGRFTIVSKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIIKVLAELDTLPPKKSEKMESLENGKTETSGKKSAEETEREIATYWRNITNARKIKLAATMAGPSVTVVAK 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17534463 17536508 + MELO3C005224.2.1 Cme09g01267 338127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01267 507 PANTHER GLUTAMATE DECARBOXYLASE 1 491 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cme09g01267 507 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cme09g01267 507 PANTHER GLUTAMATE DECARBOXYLASE 1 491 - -
Cme09g01267 507 Gene3D - 66 360 IPR015421 GO:0003824
Cme09g01267 507 MobiDBLite consensus disorder prediction 452 474 - -
Cme09g01267 507 CDD DOPA_deC_like 59 439 - -
Cme09g01267 507 Gene3D - 361 448 - -
Cme09g01267 507 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
Cme09g01267 507 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cme09g01267 507 Gene3D - 1 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01043 Cme-Chr9:14563274 Cme09g01267 Cme-Chr9:17534463 0 dispersed
Cme09g01265 Cme-Chr9:17516587 Cme09g01267 Cme-Chr9:17534463 0 dispersed
Cme09g01267 Cme-Chr9:17534463 Cme12g02043 Cme-Chr12:25911934 0 dispersed
Cme09g01266 Cme-Chr9:17519935 Cme09g01267 Cme-Chr9:17534463 3.23E-24 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01267 K01580 - csv:101208026 1011.13