Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01287 ATGTTTCTCAGCTCTTTGTTGAATTTTCCACAGAAGAAAAGAAATATTTTGGTTCTTAATCCAATGGAAAGAAACTTCTTTCAGTTTTCTCTTCCTTCTCTTGCTTTTCCAGTGATCTTTATCTTATTTGCTGCTTTGGCTTCTTCAGCAGAACAAGAGGGTGCGACTTCAATAAAAACTGATGTTGCAGCTCTTCTTAAGTTCAAGAATTTGATTGACAAGGACCCCAATGGAGTGTTGTCCAATTGGAAGCTTGAAAACAATCCATGTTCATGGTATGGAGTTTCATGTCAATCTAAACGAGTGATTGCTCTTGATTTGAGTGGCTGTAGTCTTACAGGGAATGTTTATTTTGATCCTCTGTCTTCTATGGATAAGTTGTTGGCTTTGAATTTATCTACAAATTCTTTCACTATAAACTCAACTACTTTGCTTCAGCTTCCTTATAATTTGCAACAACTTGAGCTTTCTCTTGCCAAAGTTGTAGGTAGTGTGCCTGAGAATCTTTTCTCAAAGTGTCCAAACCTTGTGTTTGTGGATCTTTCATTCAACAATTTGACAAGCTATCTGCCTGAAAATCTTCTTTTGAATGCTAATAAGCTTCAAGATCTTGATATCTCTTACAATAATCTAACTGGGTTGATCTCAGGATTGAGAATTGATGAGAATTCTTGCAACTCTTTGTTGCGGGTTGATCTTTCAGCAAATCGAATCATCGGTTCGATTCCGAGTTCCATTTCAAACTGCACGAATCTGCAGACACTTGGTTTGGCTGACAATTTACTCAGCGGGGAAATCCCAAGATCTTTAGGGGAACTCAGTAGTTTACAAAGGGTTGATATATCTCGTAATCAGCTCACAGGTTGGCTCCCTTCTGATTGGAGAAATGCTTGCAATTCACTTCAAGAACTAAAGCTTTGTTACAACAACATATCTGGTGTAATTCCTGCTTCCTTCTCTGCTTGCTCTTGGCTTCAAATTATGGATCTTTCAAACAACAACATATCTGGTCCTTTACCAGATTCCATCTTCAAGAATCTTGTCTCTTTACAAAGCTTGTTATTGAGTAATAACAAAATCTCTGGACCATTGCCTTCATCCATATCTCACTGCAAGAAACTTCAGCTTGTAGACTTAAGTTCCAATAGAATTTCTGGTTTGATTCCACCAGGTATATGCCCAGGTGCTGAGTCACTTCAAGAACTGAAAATGCCAGACAATCTCATCATAGGAGGAATCCCACCTGAACTCTCACTATGTACACAGTTAAAGACAATTGATTTTAGTTTAAACTATCTGAACGGGTCAATACCTGCAGAGCTTGGAAGGCTTCAGAATCTTGAACAGCTGATAGCATGGTTTAATAGCTTAGAAGGGAAAATCCCACCAGAATTGGGGAAGTGTAGAAGCTTGAAAGATGTTATACTAAATAACAATCGTTTAAGTGGGGAAATTCCCACTGAATTGTTCGATTGTAGCAACCTTGAATGGATTTCGCTCACGAGTAATGAACTCACCGGCGAAGTCCCAAAAGAGTTTGGTCTTTTGTCAAGGTTGGCTGTTCTGCAACTTGGGAACAATAGCTTAAGTGGTCAGATACCAGGGGAGTTGGCAAACTGCAGCACTTTGGTTTGGTTGGATTTGAACAGCAACAAGCTTACAGGAGAAATTCCACCTAGACTCGGGAGGCAGCTTGGAGCCAAATCCTTGAATGGGATTCTTTCTGGAAACACTCTAGTGTTCGTTCGAAATGTAGGGAATTCGTGTAAAGGAGTTGGGGGCTTGTTAGAGTTTTCTGGAATCAGACCTGAAAGACTACAGCAGGAACCAACATTAAAGACCTGTGATTTCACTAGATTGTACTCCGGTCCAGTCCTCAGTTTGTTTACGAAGTACCAAACTTTGGAGTATTTGGATCTTTCTTACAATGAGCTTCGTGGGAGAATACCAGAAGAGTTTGGAGATATGGTTGCTTTGCAGGTTCTCGAATTGTCACATAACCAACTTTCTGGGGAGATTCCGGAATCCTTTGGCCGCTTAAAGAACTTAGGAGTGTTTGATGCCTCACATAATAGACTGCAGGGTCACATTCCAGATTCATTCTCAAACTTATCATTCTTAGTGCAAATTGATCTATCTTACAATGAACTAACCGGGAGAATTCCATCAAGGGGACAACTTAGTACACTGCCGGCAAGTCAGTATGCAAACAATCCAGGACTTTGTGGAGTTCCTTTGCCTGAATGCCAGAGTGATGACCAGCAGACAAGTCCTAATGGAGATGCTAGCAAAGGAAGAACAAAGCCAGAAGTCGGGTCATGGGTTAACAGTATTGTTTTAGGTGTTCTAATTTCCATTGCCTGTGTCTGCATTTTGATTGTATGGGCCATTGCCATGCGTGCAAGACGAAAAGAAGCAGAGGAAGTGAAGATGCTTAATAGTTTACAAGCAATACATGCCCCTACTACATGGAAAATTGACAAAGAGAAAGAACCCCTGAGTATCAATGTGGCAACTTTCCAAAGACAACTAAGGAAGCTCAAGTTCTCCCAACTGATTGAAGCTACTAACGGCTTCTCAGCAGAAAGTCTCATAGGGAGTGGCGGGTTCGGTGAAGTATTTAAAGCAACACTAAAGGATGGATCGAGTGTTGCAATCAAGAAATTGATACGTCTTAGTTGCCAAGGAGATCGTGAATTCATGGCGGAGATGGAAACTTTAGGAAAGATCAAACATGGAAACTTAGTACCTCTTTTGGGTTACTGTAAAATAGGTGAGGAGAGGCTTCTAGTGTATGAGTTTATGGAGTTTGGTAGCCTAGAAGAGATGCTTCATGGAAGAGCAAAGATGCAGGATCGAAGAATTCTAACATGGGATGAAAGGAAAAAGATTGCCAGAGGTGCTGCTAAAGGACTTTGTTTCCTACACCACAACTGCATTCCACACATAATACACAGAGACATGAAGTCCAGCAATGTACTCCTGGACCATGACTTAGAAGCAAGAGTTTCGGATTTTGGAATGGCAAGGCTGATAAGTGCTCTTGACACCCATCTGAGTGTAAGCACACTTGCAGGCACTCCTGGTTATGTCCCTCCTGAATACTACCAAAGCTTCAGATGCACAGCAAAAGGCGACGTTTATTCATTCGGCGTCGTCCTCTTAGAACTTTTGACAGGGAAACGACCAACCGATAAGGAGGATTTTGGGGACACCAACTTGGTGGGATGGGTCAAAATGAAAGTAAACGATGGAAAACAAATGGAAGTGATTGATCCGGAGTTGCTGTCAGTAACCAAAACAAGTGATGAATCAGAAGCAGAAGAGGTTAAAGAAATGGTTAGGTATTTGGAGATAACTCTTCGGTGTGTAGAAGAGTTTCCTTCCAAAAGGCCTAACATGTTGCAGGTGGTGACAATGCTGCGAGAGTTGATGCCCGGATCAACCAATGGAAGCAGCAACAGTGCTTGA 3471 41.28 MFLSSLLNFPQKKRNILVLNPMERNFFQFSLPSLAFPVIFILFAALASSAEQEGATSIKTDVAALLKFKNLIDKDPNGVLSNWKLENNPCSWYGVSCQSKRVIALDLSGCSLTGNVYFDPLSSMDKLLALNLSTNSFTINSTTLLQLPYNLQQLELSLAKVVGSVPENLFSKCPNLVFVDLSFNNLTSYLPENLLLNANKLQDLDISYNNLTGLISGLRIDENSCNSLLRVDLSANRIIGSIPSSISNCTNLQTLGLADNLLSGEIPRSLGELSSLQRVDISRNQLTGWLPSDWRNACNSLQELKLCYNNISGVIPASFSACSWLQIMDLSNNNISGPLPDSIFKNLVSLQSLLLSNNKISGPLPSSISHCKKLQLVDLSSNRISGLIPPGICPGAESLQELKMPDNLIIGGIPPELSLCTQLKTIDFSLNYLNGSIPAELGRLQNLEQLIAWFNSLEGKIPPELGKCRSLKDVILNNNRLSGEIPTELFDCSNLEWISLTSNELTGEVPKEFGLLSRLAVLQLGNNSLSGQIPGELANCSTLVWLDLNSNKLTGEIPPRLGRQLGAKSLNGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLQQEPTLKTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGRIPEEFGDMVALQVLELSHNQLSGEIPESFGRLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSYNELTGRIPSRGQLSTLPASQYANNPGLCGVPLPECQSDDQQTSPNGDASKGRTKPEVGSWVNSIVLGVLISIACVCILIVWAIAMRARRKEAEEVKMLNSLQAIHAPTTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGSGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHGNLVPLLGYCKIGEERLLVYEFMEFGSLEEMLHGRAKMQDRRILTWDERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHDLEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVNDGKQMEVIDPELLSVTKTSDESEAEEVKEMVRYLEITLRCVEEFPSKRPNMLQVVTMLRELMPGSTNGSSNSA 1156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17788528 17791998 + MELO3C005236.2.1 Cme09g01287 338147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01287 1156 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 46 1145 - -
Cme09g01287 1156 SUPERFAMILY L domain-like 612 745 - -
Cme09g01287 1156 Pfam BspA type Leucine rich repeat region (6 copies) 155 260 IPR026906 -
Cme09g01287 1156 SMART serkin_6 859 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01287 1156 ProSiteProfiles Protein kinase domain profile. 859 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01287 1156 Gene3D - 574 630 - -
Cme09g01287 1156 MobiDBLite consensus disorder prediction 749 763 - -
Cme09g01287 1156 Gene3D Transferase(Phosphotransferase) domain 1 935 1154 - -
Cme09g01287 1156 Gene3D Ribonuclease Inhibitor 60 171 IPR032675 -
Cme09g01287 1156 Pfam Protein kinase domain 861 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01287 1156 SMART LRR_typ_2 516 540 IPR003591 -
Cme09g01287 1156 SMART LRR_typ_2 469 492 IPR003591 -
Cme09g01287 1156 SMART LRR_typ_2 273 296 IPR003591 -
Cme09g01287 1156 SMART LRR_typ_2 347 371 IPR003591 -
Cme09g01287 1156 SMART LRR_typ_2 173 197 IPR003591 -
Cme09g01287 1156 SMART LRR_typ_2 444 468 IPR003591 -
Cme09g01287 1156 SMART LRR_typ_2 656 680 IPR003591 -
Cme09g01287 1156 ProSitePatterns Protein kinases ATP-binding region signature. 865 888 IPR017441 GO:0005524
Cme09g01287 1156 Gene3D Phosphorylase Kinase; domain 1 820 934 - -
Cme09g01287 1156 MobiDBLite consensus disorder prediction 746 769 - -
Cme09g01287 1156 ProSitePatterns Serine/Threonine protein kinases active-site signature. 983 995 IPR008271 GO:0004672|GO:0006468
Cme09g01287 1156 Pfam Leucine rich repeat 300 360 IPR001611 GO:0005515
Cme09g01287 1156 Pfam Leucine rich repeat 628 669 IPR001611 GO:0005515
Cme09g01287 1156 Pfam Brassinosteroid receptor island domain 571 629 IPR045381 -
Cme09g01287 1156 SUPERFAMILY L domain-like 86 294 - -
Cme09g01287 1156 SUPERFAMILY Protein kinase-like (PK-like) 840 1141 IPR011009 -
Cme09g01287 1156 Gene3D Ribonuclease Inhibitor 191 749 IPR032675 -
Cme09g01287 1156 SUPERFAMILY RNI-like 231 560 - -
Cme09g01287 1156 Pfam Leucine rich repeat N-terminal domain 59 97 IPR013210 -
Cme09g01287 1156 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 46 1145 - -
Cme09g01287 1156 CDD STKc_IRAK 865 1144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00980 Cme-Chr6:6983400 Cme09g01287 Cme-Chr9:17788528 3.07E-25 dispersed
Cme08g00469 Cme-Chr8:2878546 Cme09g01287 Cme-Chr9:17788528 0 dispersed
Cme09g01287 Cme-Chr9:17788528 Cme05g00654 Cme-Chr5:7055603 1.54E-153 dispersed
Cme09g01287 Cme-Chr9:17788528 Cme08g00910 Cme-Chr8:5986660 2.98E-156 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65158 PF00069 Pkinase 1.00E-43 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01287 - - csv:101208987 2255.71