Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01288 ATGTTGAAACCTTCTTCTTCTTCTTCTTCCACACCCCTTCTTCCTCCTCCTCCTCCTCCTCCTCCCCCCAATTCCGACCAATATTCCATCACCACCAAACGAAAACGAAGACCCGCCGGCACTCCAGATCCGGATGCGGAAGTGGTTTCTTTGTCCCCAAAGACGCTACTTGAATCGGATCGGTACGTATGTGAGATATGCAATCAAGGGTTTCAAAGAGATCAGAATCTACAGATGCATCGACGGCGCCACAAGGTGCCGTGGAAGTTGGTGAAGAGGGCGGAGGCGGAGAGTAGTAGTAGTAATGTTGTTGTGAAGAAAAAGGTGTTTGTTTGTCCAGAGCCTACGTGTCTACATCATCACCCTTGCCATGCGCTTGGTGATCTAGTTGGGATTAAGAAACACTTCCGGAGAAAGCATAGTAACCAAAAACAGTGGGTTTGTGACAAATGCTCTAAGGCTTACGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGAGTGGAGAGTTTCATAGAGCATCAAGACACTTGCAATCTTCGCCATATGAGGTCCGATCAGTTGCAGTCGGCGGTGGTACGACCACCACCACCACCACCACTGTTATTGCAACCCTATAACTCACGAGCAGTATCTTACACCGGCGCCTCCACCAGCAACGATCATGCATTTCAAATGGCTAGTACTCCATTACGAGGGTTTCCAATTTTATCATCAAACTCAGATCGAAACATCAACATTAATTTACCCGATCGCCATGATCTCGAGCTCCATCTCTCTTCTCCAAGCTCAGCTTTTCTGAAGCTCTCAATTGGGTCGTCCAACAAGGAGCCAAGTGATGACCGTCAACTCGAGCTGGCGATCGCAGAGAAGGCATATGCGGATGAAGCAAGACGAGAGGCAAAACGACAGATCGAAATTGCCGAGGTCGAGTTTGCAAATGCAAAAATGATAAGACAGCAAGCTCAAGCGGAATTGGAGAAAGCAAGGATCTTGAAGGAAGAAGCTAGCCGGAAAATGAGCTCCACCATTATGGAAATCACTTGCCAAACTTGCCGGTTGCATTTTCACGTCAGCTCCGCCATGCCAGAGGAGACCTCACTCGCCATCAGCTACATGTCATCTGCTACGACAGAAGGTGATGGAGAGTAA 1200 48.25 MLKPSSSSSSTPLLPPPPPPPPPNSDQYSITTKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCNLRHMRSDQLQSAVVRPPPPPPLLLQPYNSRAVSYTGASTSNDHAFQMASTPLRGFPILSSNSDRNININLPDRHDLELHLSSPSSAFLKLSIGSSNKEPSDDRQLELAIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMSSTIMEITCQTCRLHFHVSSAMPEETSLAISYMSSATTEGDGE 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17800861 17803457 - MELO3C005237.2.1 Cme09g01288 338148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01288 399 MobiDBLite consensus disorder prediction 10 26 - -
Cme09g01288 399 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 27 282 - -
Cme09g01288 399 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 296 399 - -
Cme09g01288 399 Gene3D Classic Zinc Finger 40 112 - -
Cme09g01288 399 SMART c2h2final6 146 173 IPR013087 -
Cme09g01288 399 SMART c2h2final6 62 84 IPR013087 -
Cme09g01288 399 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cme09g01288 399 Gene3D Classic Zinc Finger 131 208 - -
Cme09g01288 399 SUPERFAMILY beta-beta-alpha zinc fingers 61 166 IPR036236 -
Cme09g01288 399 MobiDBLite consensus disorder prediction 1 49 - -
Cme09g01288 399 Coils Coil 314 355 - -
Cme09g01288 399 PANTHER OS03G0310200 PROTEIN 27 282 IPR039288 GO:0009630
Cme09g01288 399 PANTHER OS03G0310200 PROTEIN 296 399 IPR039288 GO:0009630
Cme09g01288 399 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02066 Cme-Chr2:26634850 Cme09g01288 Cme-Chr9:17800861 5.32E-18 dispersed
Cme09g01288 Cme-Chr9:17800861 Cme12g02049 Cme-Chr12:25956162 1.08E-143 dispersed
Cme09g01288 Cme-Chr9:17800861 Cme08g00831 Cme-Chr8:5504754 7.74E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41953 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01288 K25871 - csv:101210468 748.043