Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01299 ATGTTCGAGGCCAAAGATCTCGCCTCCGATGGCGAGAACTCTCGAACCAAGCTTTTGCGCCATGTTTCTGACCGTATCAGAGATAATTCCGATTCCAAATCTGGGTTTTCCGACAAGGGTGTTCTTGGTTTTCGGGAAGAACAATCGAAATCTGCTCGAATCGGGAATTCGGGTTCTCAAGAACTCACACTTAGCTACCTTTGTGAGAAGGACAAGGGTTTTGCGTCTTCTTCCTTCGAGAAAGGTAATTACAAAGGTAAGGAAGTTTTGTTTTCTGAGAATACTAACGAAGATGATAAATGGGTTGAGAGGGATTTCCTTAATTTGAACTCGAATAGGGTAAACCAGTCGAAGCGGGAGGTTGAGGATGAAATTGAAAGGGAGAATCGAGGAAAGAAGCCGAAGCTTGAAACTCTTAATCTTTCTTTAGCTTTACCTGAAGTTTCACTTTCTCTTACCGCTTCAAATGCTTTGCAAAATGAAGATCCTCCTCCTGTTCGATCAAAGCCCTGTAGGAGCCACCAATCTTTAGCCCCTTCAATGAACAACACCCAAACTACTTGTTCTAACGATTTCACTGCTGCTTCGCTTTCCTATTCCTATTCCCACCAATTTTCTCACAACCCCAGTTGCTCGTTGACGCGAAATTCGACTGAGAATTACGAGTATTCTGTTGGGAGAGACGACCATATTTGGAACTGTGGAGAGGGAACTAATGGGTCAGTTCATAGCAGGTTCAAACCATTAGGGGATGGAGTTGCCTTGTCAAATCATGGAGGTGGGCTTAATTCTTTGTTGCAGGGGAATCGCCCTTTGAATAAGGAGATATGTAATAACTCTGATGAGCACTCGTTCTTTCCATCGGAGCTTCCGGCTAGACCGAGAACAGAGATGAAGTCAGGGAATTCGATTGGAAGGGGATCAGAAAATTTGAAGGGGGTAGAGAGTATTGGTAGGCCGGAGAGAATTCTTCGTGAAATCGTTTCGGAGTCGATTTCAATCATGTCTCAGATAGTTCAGGAGCTTCCTGAGGAAACACTTTCATCAATCAAAGATTACTTGAAAGATCTGATTGCTATGCCTGAAAAGAGAGACGAATTATCATCTCTACAAAAACGGTTAGAGCGAAGATCTGATCTAACGAAGGAAACTCTTTCAAAGTGTCACAAAGCACAGCTCGAAATTTTAGTTTCAGTAAAGATGGGGCTTGCAAGTTTCATCTCAGGAAAAAGCAGATGCTCCATTTCTGAGCTTGTGGACATTTTCTTGTTTCTGAAATGTAGGAGCTGCAAGAGTGTAATCCCAGTTGATGATTGTGACTGCAAAATCTGCTCAGCCAACAAGGGGTTTTGCAGTTCATGTATGTGCCCCATCTGTTTGAACTTTGATTGTGCAAGCAATACTTGTAGTTGGGTTGGTTGTGATGTTTGCTCCCATTGGTGTCATGCTGCTTGTGGGATTGAGAAGAATCTCATTCGGCCTGGTCCAAGCCTCAAAGGTCCATCGGGGACAACGGAGATGCAGTTCCATTGCATTGCTTGTAATCATGCTTCAGAGATGTTTGGATTTGTGAAGGATGTTTTTGGGTACTGTGCAAAGAACTGGGGTCTAGAAACCTTAATGAAGGAGCTCGAGTGCGTGAAGAGGATCTTTATTGGAAGCGATGACTACAAAGGCAAGGATTTGTATATTAAAGCTTCTCAGATGCTGGCCAAGCTTGAAAGGAAAGCAATTGACCCTTGGGAGGCCTGCAATATCATTCTTGAATACTTCAATTTTAGATGGTACATCGGAGATTTCAACTTCTGA 1809 43.23 MFEAKDLASDGENSRTKLLRHVSDRIRDNSDSKSGFSDKGVLGFREEQSKSARIGNSGSQELTLSYLCEKDKGFASSSFEKGNYKGKEVLFSENTNEDDKWVERDFLNLNSNRVNQSKREVEDEIERENRGKKPKLETLNLSLALPEVSLSLTASNALQNEDPPPVRSKPCRSHQSLAPSMNNTQTTCSNDFTAASLSYSYSHQFSHNPSCSLTRNSTENYEYSVGRDDHIWNCGEGTNGSVHSRFKPLGDGVALSNHGGGLNSLLQGNRPLNKEICNNSDEHSFFPSELPARPRTEMKSGNSIGRGSENLKGVESIGRPERILREIVSESISIMSQIVQELPEETLSSIKDYLKDLIAMPEKRDELSSLQKRLERRSDLTKETLSKCHKAQLEILVSVKMGLASFISGKSRCSISELVDIFLFLKCRSCKSVIPVDDCDCKICSANKGFCSSCMCPICLNFDCASNTCSWVGCDVCSHWCHAACGIEKNLIRPGPSLKGPSGTTEMQFHCIACNHASEMFGFVKDVFGYCAKNWGLETLMKELECVKRIFIGSDDYKGKDLYIKASQMLAKLERKAIDPWEACNIILEYFNFRWYIGDFNF 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17989263 17993504 - MELO3C005247.2.1 Cme09g01299 338159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01299 602 MobiDBLite consensus disorder prediction 285 312 - -
Cme09g01299 602 Pfam PHD - plant homeodomain finger protein 428 549 IPR032881 -
Cme09g01299 602 CDD PHD_OBE1_like 455 514 - -
Cme09g01299 602 PANTHER PROTEIN OBERON 3 1 593 - -
Cme09g01299 602 MobiDBLite consensus disorder prediction 1 41 - -
Cme09g01299 602 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 462 482 IPR004082 -
Cme09g01299 602 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 392 407 IPR004082 -
Cme09g01299 602 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 535 554 IPR004082 -
Cme09g01299 602 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 418 439 IPR004082 -
Cme09g01299 602 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 377 392 IPR004082 -
Cme09g01299 602 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 338 360 IPR004082 -
Cme09g01299 602 MobiDBLite consensus disorder prediction 157 179 - -
Cme09g01299 602 MobiDBLite consensus disorder prediction 1 34 - -
Cme09g01299 602 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 593 IPR004082 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01299 - - - csv:101209125 1169.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02455 Cme-Chr1:32747633 Cme09g01299 Cme-Chr9:17989263 7.56E-11 dispersed
Cme09g01299 Cme-Chr9:17989263 Cme11g00940 Cme-Chr11:13124288 3.34E-70 dispersed
Cme09g01299 Cme-Chr9:17989263 Cme01g00538 Cme-Chr1:4030552 2.20E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g536 . . . . . Bpe10g01008 Bma14g01925 Bma15g00021 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0340 Cone9ag0374 . Csa05g01962 . . Blo06g01035 . Bda07g01736 . . . . . . . . Cma04g01801 . . . . . . . . . . . . . . . . . . . . . . Cme09g01299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005873 3 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g01299 Cme_Chr09 FPKM 0.15578 0.260243 9.750088 10.06369 9.639576 9.059898 9.869861 3.046289 2.693324 3.325223