Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme09g01316 | ATGTCTTCCCCATCCTTTCCTTCTTCCATGGACCCTCCCGCTCAACAGATCCCTCTCTTACCTTCCCGTCAGCCCCCCTCCAACTCTGACGCCTCCACTTCCCCAATCGGCCCTCTTGCCCTTCTCTTGGGTCGCGCCACTGGCCGCCGTGGAACTTCAATGCTCGTTCGTGAGACGGCGGCACGTGAACTTGAAGAGCGCCGCATCGATTGGGGCTATTCCAAGCCTGTGGTTGCCCTTGACATTACGTGGAATTTAGCTTTTGTTTTCGTTTCCCTGGGTGTGCTTATTCGCTCTGTCCATGAAAAACCCAATACGCCAATTCGGCTTTGGATTGTGGTTTATGCGGCTCAGTGCTTGGTGCACGTTGTGCTTGTGTGGTTTGAGTTTAAGAGGAGGAATGCGAGGAGGGCTAGGGATATGGAGACGCAGCAACAGCAGCAGCCTGATGGTTATGTAACTAATGAAAGCGATGAAGACGATGGTGGCCAAAGGAGTCTTTCCAGTGTTGCGAAAAGATGTGAGTCAGTGAACACTCTGGTATCGTTAATTTGGTGGTTGTTTGGCTTTTATTGGGTCGTTGCTGGTGGTAACATCCTCATGCAGAATGCTCCATCTTTATACTGGCTGGCTGTTGTATTCCTGGCCTTTGATGTGTTCTTTGCAGTCTTTTGTGTTGTTTTGGCATGTTTGATTGGAATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCCATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACCGATGCTGATTTAAGTATGCTTCCTAAGTACAGATATCGAGTGTCCAATGAGCCATCTCCAGGGGATGGGTTAATGGTTCCAGTAGAGACTAGCAGTAGATACTTGACGACTGAGCGCGTTCTATTACGCGAGGATGCGGAGTGCTGTATATGTCTTAGTCCGTACGAGGATGGAGTCGAGCTTCATGCTCTTCCCTGCAATCACCATTTTCATTATGCGTGCATCACAAAATGGCTGAAGATGAATGCAACATGTCCTCTGTGCAAGTATAATATTCTTAAGAATAGTGAACCCGTGTAA | 1071 | 48.55 | MSSPSFPSSMDPPAQQIPLLPSRQPPSNSDASTSPIGPLALLLGRATGRRGTSMLVRETAARELEERRIDWGYSKPVVALDITWNLAFVFVSLGVLIRSVHEKPNTPIRLWIVVYAAQCLVHVVLVWFEFKRRNARRARDMETQQQQQPDGYVTNESDEDDGGQRSLSSVAKRCESVNTLVSLIWWLFGFYWVVAGGNILMQNAPSLYWLAVVFLAFDVFFAVFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDADLSMLPKYRYRVSNEPSPGDGLMVPVETSSRYLTTERVLLREDAECCICLSPYEDGVELHALPCNHHFHYACITKWLKMNATCPLCKYNILKNSEPV | 356 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 18235751 | 18239528 | - | MELO3C005253.2.1 | Cme09g01316 | 338176 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme09g01316 | 356 | SUPERFAMILY | RING/U-box | 291 | 351 | - | - | |
| Cme09g01316 | 356 | Pfam | Ring finger domain | 304 | 346 | IPR001841 | - | |
| Cme09g01316 | 356 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE RIE1-LIKE | 15 | 353 | - | - | |
| Cme09g01316 | 356 | PANTHER | TARGET OF ERK KINASE MPK-1 | 15 | 353 | - | - | |
| Cme09g01316 | 356 | CDD | RING-H2_RNF111_like | 304 | 348 | - | - | |
| Cme09g01316 | 356 | ProSiteProfiles | Zinc finger RING-type profile. | 305 | 346 | IPR001841 | - | |
| Cme09g01316 | 356 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 351 | IPR013083 | - | |
| Cme09g01316 | 356 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Cme09g01316 | 356 | SMART | ring_2 | 305 | 345 | IPR001841 | - | |
| Cme09g01316 | 356 | MobiDBLite | consensus disorder prediction | 139 | 165 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02142 | Cme-Chr4:28718976 | Cme09g01316 | Cme-Chr9:18235751 | 6.33E-94 | dispersed | |
| Cme06g02670 | Cme-Chr6:33787738 | Cme09g01316 | Cme-Chr9:18235751 | 1.87E-119 | dispersed | |
| Cme08g01459 | Cme-Chr8:13309543 | Cme09g01316 | Cme-Chr9:18235751 | 1.82E-16 | dispersed | |
| Cme08g01460 | Cme-Chr8:13311955 | Cme09g01316 | Cme-Chr9:18235751 | 2.94E-28 | dispersed | |
| Cme09g01316 | Cme-Chr9:18235751 | Cme06g02358 | Cme-Chr6:30878388 | 2.72E-11 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme09g01316 | - | - | cmo:103504433 | 664.84 |