Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01347 ATGGCTTGCTTGGTTTCTCGTACCGGAAGAGAATTGCAGAGATATAATCATATGGGTTTTCGTCAAGTTGTGGGTTGTATACCTTACAGATTTAAATATAATGAAGATGGGATGAAGATTTGTAATGAATATGAGGTGCTTGTGATAAGTTCTCAAAAGGGTCAAGGCCTGATGTTCCCTAAGGGTGGTTGGGAACTTGATGAATCCTTGGAACAAGCTGCTTCTAGAGAGTCACTTGAAGAAGCTGGGGTTCTTGGCAAAGTTGAGTCTCAACTTGGAAAATGGAGATTCATCAGTAAAAGCCAAGGCACATATTATGAAGGCTATATGTTCCCTTTATTTGTTGAAGAACAACTTGACCTCTGGCCAGAAAAACATGTTAGAGAAAGAATATGGGTATGTCTTAAAGCTCATATACACATAAACCTCATTAGATTTCATCATAAACACAAGAATTGA 459 38.13 MACLVSRTGRELQRYNHMGFRQVVGCIPYRFKYNEDGMKICNEYEVLVISSQKGQGLMFPKGGWELDESLEQAASRESLEEAGVLGKVESQLGKWRFISKSQGTYYEGYMFPLFVEEQLDLWPEKHVRERIWVCLKAHIHINLIRFHHKHKN 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18669305 18671108 + MELO3C005275.2.1 Cme09g01347 338207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01347 152 PANTHER NUDIX HYDROLASE 17, MITOCHONDRIAL 1 135 - -
Cme09g01347 152 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1 135 - -
Cme09g01347 152 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 147 - -
Cme09g01347 152 Pfam NUDIX domain 40 138 IPR000086 -
Cme09g01347 152 ProSiteProfiles Nudix hydrolase domain profile. 19 152 IPR000086 -
Cme09g01347 152 CDD Nudix_Hydrolase_9 22 133 - -
Cme09g01347 152 SUPERFAMILY Nudix 11 148 IPR015797 -
Cme09g01347 152 ProSitePatterns Nudix box signature. 62 83 IPR020084 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01347 K07766 E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] - csv:101208911 274.633
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01959 Cme-Chr6:23696775 Cme09g01347 Cme-Chr9:18669305 1.55E-31 dispersed
Cme09g00912 Cme-Chr9:12620858 Cme09g01347 Cme-Chr9:18669305 1.63E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g490 . Blo16g00750 . . . . . . . . . . . . . . Cpe01g01832 . . . . . . . . . . . . . . . . Cone6ag0369 Cone9ag0399 . . . . . . . . . . . Bma06g01128 . . Cmo15g01025 . Cma15g00978 . Car15g00924 Cpe13g00349 . Bhi12g00937 . . . . . . Cla01g00636 Cam01g0663 Cec01g0655 Cco01g0682 Clacu01g0652 Cmu01g0626 Cre09g1878 Lsi09g00685 . . Cme09g01347
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001639 0 2 2 2 2 1 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 5 2 3 69