Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01348 ATGGAAAAAATCTTCCGGATTATGAATATCAATATTTCAACTCACAAATTAATCAATTTCACTCTCAGAACTCCTAAACTTCTCACTCCGTTTGTACTCTTTCATGGTTCTGACAAAAATCTGGCCTCAGATTCGGAGCTGGAACTCGATTCCGACAAGCTCGGTTATCGGCCACCCAGATCTCGAAGACGCTGGATTTCTGAAGAACAGGTTGATATTAGAGAGGTTTCAAAAGCAAGGGAGTTTAAAGTTCAGATAGACCCATGGCCGGAATGGGTGGACTTCATGGAATGTTTGTCAAAGAAAGGGTACTTTGAAGGAGACAGGATCCCGTTTCTGAATGCCGAATTGGGTGCAAAAGATTTCAACCATATTCGGACTGCGTCTCTTGATTTCGCGAGGGATCGGTCTGACCTGATACGGTGCTTGTCCAGGAAAGACTTACAGGTGATTGCAGGATGTGGATGCCCAAGCACAGATAGGAAAGTTGTGAACTCAGGAAAGCGTCTCAGAGCACATTTGGGCATTGATGAGGGAAATGTCTGCAGTTATTGTGACCTGCAAAGAGAATGTGAGAGGGCATATGCAAAGGCATGTGGAGATGAAGGAGGTCGGACCTTGGATGTCATGCGCGTTTTGTTATTTTATGGGCTTGATCACATCTCTGCTATAGTGGAGAACAGACCATGTCTGGACAAAAAGGCCAATGACTCTGTTAGAAAGCTGTTGAAAGATATTGTTGAACATAGTACAGGAGAACGTGAATCTGATCTTCTAAAGTCTAAGGAGGCTACTTCAGCAGAAAATCATGACACAAGTGCTCCGGTGACACGAGGCGACTGGCATTGTCCAAAATGCAACTTTTTCAACTTTTCTAGAAACGTCAAGTGCTTACGCTGTGGCTATATATTCCTCGAGAGACTTCGGAAACTTAATGAGGATCAAGTCAATCTTCCATTGAAGAAGGGCGACTGGATTTGTGAGACGTGTAATTTCTTGAACTTTGCTAAGAATTCTACATGTTTGCAATGCAAAGAGAAGCCTTTGAACCGACGGCTGAATCAAGGGGAATGGGAATGCGAATCGTGCAATTATATCAATTTTCGAAAGAACACGCAATGCTTGAGGTGTGATCACCAACGGCGGAAAGCACTAAATACGCAAAGCGTTTCTGCTGGACCTGCAGCTGAGAATGAAAACTACAGTTTCAGTAAGCCTAAACTCTCTTTTGGCGAAGTTGGAAATAATGCAGGTAGAAAAAATGATGGTTGGATGTGGAGATTTGGTGAAAATGAGAGTGAAGATGATTCTGGATTTCTAGATTTTCCTATCGCTCGCTCTTCTGGTAGTTCAGAAAGACAAGAAAGAAGGAAAGTGGAGATGTTAGAGAAGAGAAAAATCATGGAAAATGCAGTAGAGAAAGAAGAAGATCTAATCTTGAGATCTAACAATATTGAAAGAAGATTTGAGTTTGTTGAATCTTCTGATGATGAAGACATAATGGAATGGTTTGGACACAAGCCAGAATCAAGCAAATTATTACTCAACTTTTTGGCCTCTTTTCTCCAACCTTTTGCTTATGAACAGCGGTTGACTGTTTTATCTCTCCCATCTATCTTTTATGACACGCTTTCTCTCTCTACACTTGCTTCTTTAACTTTCGGAACCCTAACTCAGTACCCCGAGCTTCAAAAAATGGGTGATGAAGCCGCGAAAGTTGTTGTTCCTCGAAACTTCAGATTACTGGAAGAACTTGAAAGAGGTGAAAAAGGAATTGGAGATGGAACTGTGAGTTATGGAATGGATGATGCTGATGATATCTATATGGCGTCTTGGACAGGAACTATTATTGGGCCACCTAACACTGTTCATGAAGGACGCATCTATCAACTCAAGTTATTCTGCGGACAGGATTATCCCGATAATCCTCCAAATGTTAGATTTCAAACACGGGTTAATATGACCTGTGTCAATCCAGAAACTGGGGTGGTGGAACCAAGCCTTTTCCCCATGCTTGCTAATTGGCAAAGGGAGCATACAATGGAGGACATATTAATGCAATTGAAGAAAGAAATGACTTCTCCCCAGAACAGGAGACTAAGTCAGCCTTCTGAAGGTAATGAAGATGGAAGAATGGACCAAAAGGGGTTAGTGTTGAAATGTTGCATTCTTTAA 2175 41.84 MEKIFRIMNINISTHKLINFTLRTPKLLTPFVLFHGSDKNLASDSELELDSDKLGYRPPRSRRRWISEEQVDIREVSKAREFKVQIDPWPEWVDFMECLSKKGYFEGDRIPFLNAELGAKDFNHIRTASLDFARDRSDLIRCLSRKDLQVIAGCGCPSTDRKVVNSGKRLRAHLGIDEGNVCSYCDLQRECERAYAKACGDEGGRTLDVMRVLLFYGLDHISAIVENRPCLDKKANDSVRKLLKDIVEHSTGERESDLLKSKEATSAENHDTSAPVTRGDWHCPKCNFFNFSRNVKCLRCGYIFLERLRKLNEDQVNLPLKKGDWICETCNFLNFAKNSTCLQCKEKPLNRRLNQGEWECESCNYINFRKNTQCLRCDHQRRKALNTQSVSAGPAAENENYSFSKPKLSFGEVGNNAGRKNDGWMWRFGENESEDDSGFLDFPIARSSGSSERQERRKVEMLEKRKIMENAVEKEEDLILRSNNIERRFEFVESSDDEDIMEWFGHKPESSKLLLNFLASFLQPFAYEQRLTVLSLPSIFYDTLSLSTLASLTFGTLTQYPELQKMGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHEGRIYQLKLFCGQDYPDNPPNVRFQTRVNMTCVNPETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEGNEDGRMDQKGLVLKCCIL 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18674229 18685497 + MELO3C005277.2.1 Cme09g01348 338208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01348 724 SMART zf_4 356 380 IPR001876 -
Cme09g01348 724 SMART zf_4 323 347 IPR001876 -
Cme09g01348 724 SMART zf_4 279 303 IPR001876 -
Cme09g01348 724 ProSiteProfiles Zinc finger RanBP2 type profile. 277 301 IPR001876 -
Cme09g01348 724 Gene3D Ubiquitin Conjugating Enzyme 562 709 IPR016135 -
Cme09g01348 724 MobiDBLite consensus disorder prediction 254 273 - -
Cme09g01348 724 ProSitePatterns Zinc finger RanBP2-type signature. 325 344 IPR001876 -
Cme09g01348 724 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 3 266 - -
Cme09g01348 724 ProSitePatterns Zinc finger RanBP2-type signature. 281 300 IPR001876 -
Cme09g01348 724 SUPERFAMILY UBC-like 574 706 IPR016135 -
Cme09g01348 724 Pfam Zn-finger in Ran binding protein and others 356 378 IPR001876 -
Cme09g01348 724 Pfam Zn-finger in Ran binding protein and others 321 345 IPR001876 -
Cme09g01348 724 Pfam Zn-finger in Ran binding protein and others 279 301 IPR001876 -
Cme09g01348 724 PANTHER ZINC FINGER PROTEIN 298 510 - -
Cme09g01348 724 MobiDBLite consensus disorder prediction 692 712 - -
Cme09g01348 724 ProSiteProfiles Zinc finger RanBP2 type profile. 321 344 IPR001876 -
Cme09g01348 724 SMART ubc_7 579 723 - -
Cme09g01348 724 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 576 724 IPR000608 -
Cme09g01348 724 Gene3D - 349 383 - -
Cme09g01348 724 Gene3D - 312 348 - -
Cme09g01348 724 Gene3D - 269 302 - -
Cme09g01348 724 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 275 300 - -
Cme09g01348 724 ProSitePatterns Zinc finger RanBP2-type signature. 358 377 IPR001876 -
Cme09g01348 724 SUPERFAMILY Ran binding protein zinc finger-like 315 346 IPR036443 -
Cme09g01348 724 SUPERFAMILY Ran binding protein zinc finger-like 273 302 IPR036443 -
Cme09g01348 724 Pfam Ubiquitin-conjugating enzyme 606 699 IPR000608 -
Cme09g01348 724 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 298 510 - -
Cme09g01348 724 ProSiteProfiles Zinc finger RanBP2 type profile. 354 383 IPR001876 -
Cme09g01348 724 PANTHER ZINC FINGER PROTEIN 3 266 - -
Cme09g01348 724 PANTHER ZINC FINGER PROTEIN 275 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01348 - - - cmo:103483035 1469.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme09g01348 Cme10g01611 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01676 Cme-Chr2:23905359 Cme09g01348 Cme-Chr9:18674229 2.40E-10 dispersed
Cme04g02353 Cme-Chr4:30381441 Cme09g01348 Cme-Chr9:18674229 4.64E-57 dispersed
Cme05g01616 Cme-Chr5:25297794 Cme09g01348 Cme-Chr9:18674229 1.57E-54 dispersed
Cme07g00516 Cme-Chr7:4340081 Cme09g01348 Cme-Chr9:18674229 3.83E-12 dispersed
Cme09g01348 Cme-Chr9:18674229 Cme10g01611 Cme-Chr10:21362552 1.45E-93 dispersed
Cme09g01348 Cme-Chr9:18674229 Cme05g01937 Cme-Chr5:27982787 7.81E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g487 . . . . . Bpe10g00978 Bma14g01936 . Cmo04g01096 . Cma04g01020 Cma04g00073 Car04g00955 Car04g00069 Sed02g0481 . Cpe01g01833 Bhi07g00380 Tan04g1525 Cmetu09g1222 Lac13g1355 . . . Cla07g00553 Cam07g0586 Cec07g0649 Cco07g0620 Clacu07g0589 Cmu07g0624 Cre07g0963 . Cone19ag0744 Cone6ag0372 Cone9ag0401 Lsi04g01108 . . Cme10g01611 . . . . . . . . . . Cmo15g01023 . Cma15g00976 . Car15g00922 Cpe13g00351 . . . . . . . . Cla01g00634 Cam01g0662 Cec01g0654 Cco01g0680 Clacu01g0650 Cmu01g0624 Cre09g1880 . . . Cme09g01348
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011612 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29