Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01355 ATGGGAGACGTGAAGGACAAGGTCAAGGGATTCATGAAAAGGTTTAATAACACGTTGTCCTCATCTTCTTCTACGAGTTTCAAGGGACAGGGAAGAGTTTTAGGTTCGTCTTCTTCTGGGTCGACTAGTTCTTTGCCTACCCGCCCATCGGAGAATCCCATTTCAAAGCCGAAGCTTGTTAGTCCACCTTCAAATTTCTCTGCCAATTCTAATCCCCCGGTTGCGAATTCGATTGCCACTGGTCAAAACAGGTCGGACCCGTCGAATAAATCGAATCCAGATCGTAAACGGGCCGATGGATTTGACCCATTTGACTCGTTTATAACGTCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAACGTGTTTGAATGTCCGATTTGTGGCCGGAGTTACAGGTCTGAAGAAGAGGTTTCGGAGCATGTAGATAGCTGTGTCAACGTTAGTACAGCCAAGGGACCGGAAGATCCGCCTACGAGTGATGCAGAATCTAGGAGTGAATTGGAGGCTTGTATTGGTACTTTCTTAGCAGGGAAGCCATCACAAGGTTCATTGGATATTGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGAGAATTCGAAGTTTAGGAAGATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTTGGGGGAGTGGAATTGTTGGAGTTCGTGGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGGCAACCATGGAGGTTCCAACGGAGGAACAAATTCACCTATTAAATAAGGTAATTGATTCGATTGACCGGCCAAAGCTTGAAGAACAGCAAGAGAAAGCCAGCACCGCACCTGAGCTGATTGAACCAAAGAAGGTGGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAACATTGCAGCCAATATTGAACTACCAGACTCCTTTTACACACTCTCTGTTGAAGAGGTCAAAAGAGAAGCTATAATGAGGAAGAAAAAGATTGCTGAGTCTCAGCTTTTGGTTCCGAAATCATACAAGGAAAAACAAGCAAAAGCTGCTAGGAGGAAGTACACAAGAACGGTTATCAGAATTCAATTTCCGGATGGCGTGGTTCTTCAAGGTGTTTTTTCTCCTTGGGAACCAACAAATACTCTATATGAGTTTGTGAGCACAGCACTGAAAGAACCCTGTTTGGAATTTGAGTTGATACATCCTGTCGGTGTTAAAAGACGTACAATCGCTCATTTTCCCGCAGAAGAAGATAAATCTAAAACACTAGATGATGAGGAGTTAGTCCCCTCAGCTCTGGTCAAGTTTAGACCAATTGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAACGAATTGCTCGAGATAATCGAACCACTTGTAAGTGGTTCAGCCGTGGCTCCTCCTACACAAGTTTAA 1419 43.97 MGDVKDKVKGFMKRFNNTLSSSSSTSFKGQGRVLGSSSSGSTSSLPTRPSENPISKPKLVSPPSNFSANSNPPVANSIATGQNRSDPSNKSNPDRKRADGFDPFDSFITSGKRSGNGYSLNVFECPICGRSYRSEEEVSEHVDSCVNVSTAKGPEDPPTSDAESRSELEACIGTFLAGKPSQGSLDIVLKLLRNIVREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEEDGEMWATMEVPTEEQIHLLNKVIDSIDRPKLEEQQEKASTAPELIEPKKVDRQIRVFFAVPENIAANIELPDSFYTLSVEEVKREAIMRKKKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPWEPTNTLYEFVSTALKEPCLEFELIHPVGVKRRTIAHFPAEEDKSKTLDDEELVPSALVKFRPIETDSVVFTGLRNELLEIIEPLVSGSAVAPPTQV 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18760624 18770379 + MELO3C005281.2.1 Cme09g01355 338215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01355 472 SUPERFAMILY PUG domain-like 182 258 IPR036339 -
Cme09g01355 472 SMART c2hc_5 122 146 IPR006642 GO:0003677|GO:0006281
Cme09g01355 472 MobiDBLite consensus disorder prediction 15 104 - -
Cme09g01355 472 ProSiteProfiles UBX domain profile. 352 436 IPR001012 GO:0005515
Cme09g01355 472 SUPERFAMILY Ubiquitin-like 324 436 IPR029071 -
Cme09g01355 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 154 IPR013087 -
Cme09g01355 472 Pfam PUB domain 182 256 IPR018997 -
Cme09g01355 472 SMART PGNneu 183 250 - -
Cme09g01355 472 Pfam UBX domain 353 434 IPR001012 GO:0005515
Cme09g01355 472 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 462 - -
Cme09g01355 472 CDD UBX_UBXN6 357 437 - -
Cme09g01355 472 MobiDBLite consensus disorder prediction 15 51 - -
Cme09g01355 472 CDD PUB 170 243 - -
Cme09g01355 472 MobiDBLite consensus disorder prediction 57 88 - -
Cme09g01355 472 Gene3D - 346 438 - -
Cme09g01355 472 Gene3D - 179 266 - -
Cme09g01355 472 SMART ubx_3 349 438 IPR001012 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01425 Cme-Chr5:23622431 Cme09g01355 Cme-Chr9:18760624 4.51E-08 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41960 PF00789 UBX 9.90E-07 CL0072 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01355 K14011 - csv:101209321 849.736