Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01369 ATGAAATTCGTGTATTGTTTTCTTCTCTTTTCATTACTAGTCATCATCCATGGCAGAAGCTTCAATAATTTCATGTCTTGCTTCCAAACCCCATATCCAGACCTCTGCTTCCATTACATAAACCCAAACGACAACATACCAACTGCCGATATTGATGAAACCTATCTAAACACCCGTTTTCGAAACTCAGCTGTTCAAGCCACTTTGAACCAAGCCAGGAAGGTACACGACCATCTTCGCTCTATCATGGATCTTGGTTCATTTGATGATGACAATAGAAATAAAGTCGCTTTAATCGACTGTTTGGAATTCTACGAGGACTCGATTGCAAAGCTCAATCGTTCGGTGTTCAGTTCCACGAGTGTTAACTCGATCGACCATTTGACGATGCTAAGTGCTTCATTAGCAAACCATCAAACATGTCTAGACGGATTTCGAGATTTCGATAATTCAAATAATTTCTTTCTTCCAATTCAAATTATGAGTAACTTCTCAAAATTGGTTAGCAATTCTCTTGCCATCACGAAGGCTGCGGTGGCACCCGCCAGTAGTTCCTCCACCTCCTGTGGCCAGCCGTTACCAGATGGCTTGTGTCCCGAGTGGGTTTACGATGATGATAAGACGCTTCTCCGGGATATGGTCGGAAAGGGCGCGGATATGGTGGTGGCCCAAGATGGAAGTGGTGATTTTAGGACGATATCGGAGGCAGTGGCCGCGGCGGAGGAGGCGAGGAAGGGAAGTGGAAGTGAAAGGTTTGTTATATATGTTAAAGGTGGGATTTACAAAGAGAATGTTGTGATTAAGAAGAGCATGAAGAATGTAATGATGATTGGAGATGGAATGGATAGAACGATCATCACAGCCATGAAGAACGTACAAGATGGATCAACAACTTTCCAATCAGCCACTTTTGCGGTGGCCGGCGAAGGATTCATCGCGAAAGATATGACATTCGAGAACACAGCGGGACCGGAGAAACACCAAGCCGTGGCACTCCGTTCTAATGCCGATCGCTCAATTTTTTACCGATGCAGCTTTAAGGGCTACCAAGACACTCTATACGCCCACTCAAACCGCCAATTTTACCGTGAATGTCACATTTATGGAACCGTCGACTTCATTTTCGGCGACGGCGCCGTGGTTTTTCAAAACTGCAACATCTTCGTGAGAAAGCCGATGATGAACCAAAAAAACACCATCACGGCCCAGGGAAGATCCGACCCGAATGAGAATACCGGGTTCGTGATCCACAATTCGGTCATCAAAGCGGCGCCGGATTTGAAGCCGGTACAAGGTTTGTACGGAACTTATTTGGGGCGGCCATGGAAAGCATATTCGAGGACGGTGATAATGAAGAGTTATTTGGACGGTTTGATTGAACCGGCCGGGTGGCTCCCTTGGGCCGGAGATTTCGGTCTAAGGACGATTTATTATGGGGAGTTTATGAACATTGGTGGTGGGGCTAATACAAAAGGGAGGGTGCGGTGGCCGGGATACCATGTGATGACGAGTGCGACGGAGGCAGAGGGGTTTACAGTGGAGAGTTTCTTGGGAGGAAGAGGTTGGATTCCTACCACCGGAGTGCCATTTGTAAATGGGGTATGA 1605 46.67 MKFVYCFLLFSLLVIIHGRSFNNFMSCFQTPYPDLCFHYINPNDNIPTADIDETYLNTRFRNSAVQATLNQARKVHDHLRSIMDLGSFDDDNRNKVALIDCLEFYEDSIAKLNRSVFSSTSVNSIDHLTMLSASLANHQTCLDGFRDFDNSNNFFLPIQIMSNFSKLVSNSLAITKAAVAPASSSSTSCGQPLPDGLCPEWVYDDDKTLLRDMVGKGADMVVAQDGSGDFRTISEAVAAAEEARKGSGSERFVIYVKGGIYKENVVIKKSMKNVMMIGDGMDRTIITAMKNVQDGSTTFQSATFAVAGEGFIAKDMTFENTAGPEKHQAVALRSNADRSIFYRCSFKGYQDTLYAHSNRQFYRECHIYGTVDFIFGDGAVVFQNCNIFVRKPMMNQKNTITAQGRSDPNENTGFVIHNSVIKAAPDLKPVQGLYGTYLGRPWKAYSRTVIMKSYLDGLIEPAGWLPWAGDFGLRTIYYGEFMNIGGGANTKGRVRWPGYHVMTSATEAEGFTVESFLGGRGWIPTTGVPFVNGV 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18920596 18923294 + MELO3C005292.2.1 Cme09g01369 338229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01369 534 SUPERFAMILY Pectin lyase-like 217 532 IPR011050 -
Cme09g01369 534 SMART PMEI_2 20 174 IPR006501 GO:0004857
Cme09g01369 534 Pfam Pectinesterase 219 519 IPR000070 GO:0030599|GO:0042545
Cme09g01369 534 CDD PMEI-like_3 26 176 - -
Cme09g01369 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 176 IPR035513 -
Cme09g01369 534 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 176 IPR006501 GO:0004857
Cme09g01369 534 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
Cme09g01369 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 178 IPR035513 -
Cme09g01369 534 ProSitePatterns Pectinesterase signature 1. 248 267 IPR018040 -
Cme09g01369 534 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 20 533 - -
Cme09g01369 534 Gene3D - 216 534 IPR012334 -
Cme09g01369 534 Pfam Plant invertase/pectin methylesterase inhibitor 26 174 IPR006501 GO:0004857
Cme09g01369 534 PANTHER PECTINESTERASE 20 533 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01369 Cme-Chr9:18920596 Cme01g02759 Cme-Chr1:34704512 4.16E-144 dispersed
Cme06g00898 Cme-Chr6:6304129 Cme09g01369 Cme-Chr9:18920596 2.07E-172 transposed
Cme06g02012 Cme-Chr6:24927549 Cme09g01369 Cme-Chr9:18920596 4.85E-148 transposed
Cme09g01544 Cme-Chr9:20495373 Cme09g01369 Cme-Chr9:18920596 5.81E-165 transposed
Cme10g00186 Cme-Chr10:1255016 Cme09g01369 Cme-Chr9:18920596 3.96E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01369 - K01051 csv:101219120 984.171