Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01370 CACTTCCGTTTCGCTTCCCTTATTTGTACAAATACAAAACCGCAGAATCAAGCAAACCCATCCCCCCCCCCCCCCGCACTCATCGCCCACTGCTTCCTCTCTATATTAATCTCCCTTCTCCCCCATTTCCCCCTATCTCCCTTCAATTCCCTCCACTTTTCTTCTCATCAACCCATGGCTCGCTTCAATGTCACCAAGAAGCTCACATCCCCCATCGATGGCCAGAAACCCGGTACTTCCGGCCTCCGCAAGAAGGTGAAAGTATTCATTCAACCGAACTACTTGGAGAATTTTGTTCAATCAACATTTAATGCATTGACTACTGAAAAAGTCAGAGGGGCTACACTTGTTGTATCTGGAGATGGACGCTATTATTCAAAGGATGCTATTCAGATAATAATTAAGATGGCTGCGGCAAATGGGGTACGCCGTATTTGGGTTGGTCAAAATGGTTTGCTTTCAACCCCTGCTGTGTCTGCTGTCATACGTGAAAGAGTTGGTGTTGATGGATCCCGAGCATCAGGAGCATTTATTTTGACTGCAAGTCACAATCCAGGAGGTCCTCATGAGGATTTTGGGATTAAATACAACATGGAAAATGGCGGCCCTGCACCAGAGGGAATTACTGATAAGATCTATGAAAACACAAAAACCATAAAGGAGTACCTAATTGCTGAAGATCTACCTAACGTGGATATTTCCGCAATAGGTGTTTCTAGCTTTGGTGGACCTGAAGGACAATTTGATGTTGAGGTTTTTGATTCAGCTAGTGACTACGTGAAGTTGATGAAGTCAATATTTGATTTTGAATCTATCCGCAAGCTTCTAACCTCTCCCAAATTTTCGTTCTGTTATGATGCTCTACATGGTGTTGCTGGAGCTTATGCAAAACGTATTTTCGTGGAAGAGCTTGGTGCACAAGAAAGCTCATTACTGAACTGCGTACCTAAGGAGGACTTTGGAGGAGGTCATCCTGACCCCAATTTGACTTATGCCAAGGAATTAGTTGATCGTATGGGATTGGGTAAATCAAGCTCTGGAGAACCTCCAGAATTTGGTGCTGCTGCTGATGGTGATGCAGATCGTAATATGGTCCTTGGTAAAAGGTTTTTTGTCACTCCTTCGGACTCTGTTGCCATTATTGCTGCTAATGCTGTTGAAGCTATTCCATACTTCTCTGCTGGTTTGAAGGGTGTTGCCAGGAGCATGCCAACCTCTGCTGCACTAGACGTGGTTGCCAAAAACTTGAAGTTGAAGTTTTTTGAGGTTCCTACTGGTTGGAAATTTTTTGGTAATTTAATGGATGCAGGAATGTGCTCAGTCTGTGGGGAAGAAAGTTTTGGAACTGGATCTGACCATATTCGTGAAAAAGATGGAATTTGGGCAGTTTTGGCTTGGTTATCCATTCTTGCTTATAAAAACAAGGGAAACCTTGATGGTGGGAAGCTCGTTTCAGTCGAAGACATAGTTCGCCAACATTGGGCCACCTATGGTCGTCATTATTATACCAGATATGATTACGAGAATGTTGATGCCGGAGCAGCAAAGGAACTGATGGCAAATCTGGTGAAACTGCAATCTTCACTTGACGAAGTGAATGGAATTGTCAAGGGAATCCGTTCAGATGTGGCAAAGGTTGTCCATGGTGATGAATTTGAGTATAAAGATCCGGTTGATGGTTCCATCTCCAAGCACCAGGGTATTCGATATTTGTTTGAGGATGGTTCACGACTGGTCTTCCGCCTATCTGGAACTGGCTCTGAAGGTGCAACAATTCGGCTCTACATCGAGCAATATGAGAAAGATCCATCAAAAACCGGGAGAGATTCTCAGGAAGCCCTTGCTCCCCTGGTGGAAGTTGCTCTTAAGCTCTCAAAAATGCAAGAGTTCACCGGGAGATCCGCACCCACCGTCATTACATAA 1923 44.41 HFRFASLICTNTKPQNQANPSPPPPALIAHCFLSILISLLPHFPLSPFNSLHFSSHQPMARFNVTKKLTSPIDGQKPGTSGLRKKVKVFIQPNYLENFVQSTFNALTTEKVRGATLVVSGDGRYYSKDAIQIIIKMAAANGVRRIWVGQNGLLSTPAVSAVIRERVGVDGSRASGAFILTASHNPGGPHEDFGIKYNMENGGPAPEGITDKIYENTKTIKEYLIAEDLPNVDISAIGVSSFGGPEGQFDVEVFDSASDYVKLMKSIFDFESIRKLLTSPKFSFCYDALHGVAGAYAKRIFVEELGAQESSLLNCVPKEDFGGGHPDPNLTYAKELVDRMGLGKSSSGEPPEFGAAADGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKNLKLKFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKGNLDGGKLVSVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMANLVKLQSSLDEVNGIVKGIRSDVAKVVHGDEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMQEFTGRSAPTVIT 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18923642 18933781 - MELO3C005293.2.1 Cme09g01370 338230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01370 640 Gene3D - 64 262 - -
Cme09g01370 640 PRINTS Phosphoglucomutase/phosphomannomutase family signature 350 365 IPR005841 GO:0005975|GO:0016868
Cme09g01370 640 PRINTS Phosphoglucomutase/phosphomannomutase family signature 280 299 IPR005841 GO:0005975|GO:0016868
Cme09g01370 640 PRINTS Phosphoglucomutase/phosphomannomutase family signature 316 329 IPR005841 GO:0005975|GO:0016868
Cme09g01370 640 PRINTS Phosphoglucomutase/phosphomannomutase family signature 175 189 IPR005841 GO:0005975|GO:0016868
Cme09g01370 640 SUPERFAMILY Phosphoglucomutase, first 3 domains 257 371 IPR016055 GO:0005975|GO:0016868
Cme09g01370 640 SUPERFAMILY Phosphoglucomutase, first 3 domains 358 504 IPR016055 GO:0005975|GO:0016868
Cme09g01370 640 CDD PGM1 69 640 - -
Cme09g01370 640 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 62 173 IPR045244 GO:0004614|GO:0005975
Cme09g01370 640 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 172 640 IPR045244 GO:0004614|GO:0005975
Cme09g01370 640 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 75 222 IPR005844 GO:0005975|GO:0016868
Cme09g01370 640 Gene3D - 371 469 - -
Cme09g01370 640 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 258 366 IPR005845 GO:0005975
Cme09g01370 640 PANTHER BNAA09G30060D PROTEIN 172 640 - -
Cme09g01370 640 PANTHER BNAA09G30060D PROTEIN 62 173 - -
Cme09g01370 640 SUPERFAMILY Phosphoglucomutase, first 3 domains 62 286 IPR016055 GO:0005975|GO:0016868
Cme09g01370 640 Gene3D - 480 640 - -
Cme09g01370 640 Gene3D - 263 370 - -
Cme09g01370 640 SUPERFAMILY Phosphoglucomutase, C-terminal domain 499 640 IPR036900 GO:0016868|GO:0071704
Cme09g01370 640 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 176 185 IPR016066 GO:0000287
Cme09g01370 640 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 374 497 IPR005846 GO:0005975|GO:0016868
Cme09g01370 640 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 547 603 IPR005843 GO:0016868|GO:0071704
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01370 K01835 pgm; phosphoglucomutase [EC:5.4.2.2] - csv:101218883 1129.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01370 Cme-Chr9:18923642 Cme09g01475 Cme-Chr9:19955317 1.35E-163 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g464 . . . . . . Bma14g01897 . . . . . . . . . Cpe01g01839 . . . . . . . . . . . . . . . . Cone6ag0384 Cone9ag0411 . Csa05g02011 . . Blo06g01007 Blo11g00973 . . . . . . . Cmo04g02216 Cmo15g01007 Cma04g02117 Cma15g00965 Car04g02059 Car15g00912 Cpe13g00359 . Bhi12g00924 . . . . . . Cla01g00622 Cam01g0650 Cec01g0643 Cco01g0668 Clacu01g0638 Cmu01g0612 Cre09g1890 Lsi09g00672 . Chy09g00838 Cme09g01370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005872 2 2 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39