Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01373 ATGGGAATTCCGCCTAAACCCACACACCCATCGCTCTTCCTCTATCGTCTTCGTTTCACCTCAGATTCTCTCTCGAAACGCCTTATTTTCGGGAGGGTTAGCAGTGATGGTGGTGGTGGTGCTGTTGATTCTTCACAGCACCAATCGGCAACTCCTGGTATCAAAGATGTACAGAATGATTCTTCTAGTATTGGAGACAGTTATGTGGCATTATTTGTGAGGATGCTCAGCTTAGATAATGATCCTCTTGATAGAGAACAAGCAATCATAGCTTTATGGAAATATTCTCTTGGAGGGAAGAAGCACATAGATGCCATCATGCAGTTTCCTGGATGCATAAATCTAGCAGTAAATCTTCTTAGGTCAGAGTCAGTCTCTACGCGTGAAGCAGCTGCTGGCCTTCTACGGTCAATTTCTCTGGTGAACTTATACCGAGAATCAGTTGCAGAAAGTGGAGCAATTGAAGAGATAACTGGCTTGCTTTGTCAACCGTCCTTGACTCCCGAGGTGAAGGAGCAAAGCATCTGTGTCTTGTGGAATTTGTCAGTAGATGAAAAACTCAGAATTAAGATTGCGAACACTGATATTCTGCCATTGCTTAGTAAGAATCTTGATGATGAGGACATGAAGGTGAAGGAAGCAGCTGGAGGGGTTTTAGCAAATCTGGCTTTGAGCCCTTGTAACCACGGGGTTATTGTCGAATCAGGCTTAATTCCTAAACTGGCGTATCAGTTGAAAGCTGAGGCAGACAGCTCAAAAATTCTGAGAAAGGAAGCAAGAAATGCATTGCTTGAACTTTGTAAAGATGAATATTATAGAATTCTTGTCATAGAGGAAGGACTGGTTCCAGTACCAATTCTTGGTGCTGCTGCTTATAAATCCTTCAGACCAGGCCTGCATTCATGGCCCAGTTTGCCCGATGGCACAGAAATTGAACAATCTTCCACAGAACCTTCAAGATTTGGTGCCTCTGAATTACTCCTTGGGTTAAATGTTGATAATAATGCAAACATAGAAGAAGGCAAGATAAATGCAATCGTTGGCCGGACTCAGCAACAGTTTCTGGCTCGAATTGGTGCCATAGAATCTGAAAATATGAAGGATTCTCAATCTGAATCATCTTCCAGTAACCATCTTACACTCTTACCTTGGATAGATGGTGTTGCTCGACTAGTTTTGATCCTTGAACTTGAGGACGATAATGCTGTAGTGAGAGCTGCTGAGTCAATCACTGATGCATCTATCAATGAACACATGCGTATTTCATTCAAGGAAGCTGGAGCGATCAAACATTTAGTAAATTTTTTAGATTATATGAATGATTCTGTCAAATGGGCTGCAGTTCAAGCTCTAGAGAGACTGTCAATTAGTAATGTGGTTTGCCAGGCAATTGAAAATGAAGGTGCACTTGGTCCTTTGCTCAGTATTTTGAAGCTCTCAAGTATCCCCGAAAATGTGATGGAGAAGACCCTCAATATACTTTCTCGGATCTTGGACCCTAGTAAAGAAATGAAGTCAAAGTTTTACAGTGGACCGGTAAACGGATCTCAAGGGGTACAACATTCAGAAGGAAATTTTGAAGCTTCTATCAGGAAAGATGCGCTGGATGCTGGTGTTGTTTCTCGCCTTGTTGAGATTTTGAACACCTCATCCCCAAACTTGAAACGGAAAGCCGCTTCTATCCTGGAATTTGTTTCTATCATGGACCCAAGCATGGAATTAATCGATCCTGTGGAGATAGAGTTGGGATTGTCGGCTGTTTTCCAGCTTGGAGTTTCAATAGATTCTGATGCTGAAGTTTGGCAGCCCGAAAGATATGCCCTTGAAGTTGAAGAAGCTGGTCTTGCAATTTCAGCAGCCTCCCGACTATTAACAAAGCTTCTAGACTCTGAAAAGTTCAGCAACAAAATAAACTCTACCCTTTTCACTAAATTGCTTCGTAAAATCCTTAAGTCGGACATTCCCATCAACCACAAAGATTGGATTGCTGCTTGCCTAATCAAAGTCAGTTCCATCTCGACGCTGAACCCAGATTCCGGAGATCCTATCAACATGGAGGTCACTCTATACGAAACAATACCAAGACTTATTGAACAGATTAAAAGCTCCTTCTCATTGGAAGTTCAGGAATCTGCTGTCGTGGAGCTGAATAGAATAGTCTCAGAAGGAATGGTCGATGCTACCCGAGCTGTTGCTTTGAAAGGCGGTATCTTTCCATTAGTAAAGCTGATCGATGAAGGAAGTGAGAGGGCAATAGAAGCAGCCTTAGCTATACTTTATAATCTGAGCATGGACAGTGAAAATCATCCAGCAATCATAGCTGCTGGAGCTGTGCCAGCATTGAGGAGAATTGTTCTATCACAACGTGTGCAGTGGCGACAAGCTCTTTATTTGTTGAGGACGTTGCCAACATGA 2415 42.57 MGIPPKPTHPSLFLYRLRFTSDSLSKRLIFGRVSSDGGGGAVDSSQHQSATPGIKDVQNDSSSIGDSYVALFVRMLSLDNDPLDREQAIIALWKYSLGGKKHIDAIMQFPGCINLAVNLLRSESVSTREAAAGLLRSISLVNLYRESVAESGAIEEITGLLCQPSLTPEVKEQSICVLWNLSVDEKLRIKIANTDILPLLSKNLDDEDMKVKEAAGGVLANLALSPCNHGVIVESGLIPKLAYQLKAEADSSKILRKEARNALLELCKDEYYRILVIEEGLVPVPILGAAAYKSFRPGLHSWPSLPDGTEIEQSSTEPSRFGASELLLGLNVDNNANIEEGKINAIVGRTQQQFLARIGAIESENMKDSQSESSSSNHLTLLPWIDGVARLVLILELEDDNAVVRAAESITDASINEHMRISFKEAGAIKHLVNFLDYMNDSVKWAAVQALERLSISNVVCQAIENEGALGPLLSILKLSSIPENVMEKTLNILSRILDPSKEMKSKFYSGPVNGSQGVQHSEGNFEASIRKDALDAGVVSRLVEILNTSSPNLKRKAASILEFVSIMDPSMELIDPVEIELGLSAVFQLGVSIDSDAEVWQPERYALEVEEAGLAISAASRLLTKLLDSEKFSNKINSTLFTKLLRKILKSDIPINHKDWIAACLIKVSSISTLNPDSGDPINMEVTLYETIPRLIEQIKSSFSLEVQESAVVELNRIVSEGMVDATRAVALKGGIFPLVKLIDEGSERAIEAALAILYNLSMDSENHPAIIAAGAVPALRRIVLSQRVQWRQALYLLRTLPT 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18986610 18992519 - MELO3C005295.2.1 Cme09g01373 338233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01373 804 Gene3D - 56 290 IPR011989 -
Cme09g01373 804 Gene3D - 607 802 IPR011989 -
Cme09g01373 804 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 735 777 IPR000225 GO:0005515
Cme09g01373 804 MobiDBLite consensus disorder prediction 39 59 - -
Cme09g01373 804 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 15 804 - -
Cme09g01373 804 SMART arm_5 184 224 IPR000225 GO:0005515
Cme09g01373 804 SMART arm_5 416 456 IPR000225 GO:0005515
Cme09g01373 804 SMART arm_5 225 268 IPR000225 GO:0005515
Cme09g01373 804 SMART arm_5 679 721 IPR000225 GO:0005515
Cme09g01373 804 SMART arm_5 457 499 IPR000225 GO:0005515
Cme09g01373 804 SMART arm_5 141 183 IPR000225 GO:0005515
Cme09g01373 804 SMART arm_5 724 764 IPR000225 GO:0005515
Cme09g01373 804 SMART arm_5 100 140 IPR000225 GO:0005515
Cme09g01373 804 SMART arm_5 527 567 IPR000225 GO:0005515
Cme09g01373 804 SMART arm_5 765 804 IPR000225 GO:0005515
Cme09g01373 804 MobiDBLite consensus disorder prediction 36 59 - -
Cme09g01373 804 SUPERFAMILY ARM repeat 386 795 IPR016024 -
Cme09g01373 804 Gene3D - 369 590 IPR011989 -
Cme09g01373 804 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 152 185 IPR000225 GO:0005515
Cme09g01373 804 SUPERFAMILY ARM repeat 71 286 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01373 - - - csv:101220075 1387.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01373 Cme-Chr9:18986610 Cme06g00051 Cme-Chr6:349012 5.59E-11 dispersed
Cme09g01373 Cme-Chr9:18986610 Cme11g01284 Cme-Chr11:19590109 3.63E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02014 . . . . . . . . . . . . Cmo15g00939 . Cma15g00902 . Car15g00841 Cpe13g00362 . Bhi12g00918 . . . Hepe02g2639 . . Cla01g00619 Cam01g0647 Cec01g0639 Cco01g0665 Clacu01g0635 Cmu01g0608 Cre09g1893 Lsi09g00669 . Chy09g00841 Cme09g01373
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011868 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 30