Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01376 ATGAAGAGGGAGCATCACCATCTTCATCCACGTCCGGAGCCCCCTTCCATGGCTGCCGTCCCTAATGGGGAGAGTTTTTTGAACACCGGTAAGGCTAAGCTCTGGGAAGAGGAAGCCCAGCTCGATGGAGGAATGGATGAGCTTCTTGCTGTTTTGGGTTATAAGGTTAAGTCCTCGGACATGGCGGATGTTGCTCAGAAGCTTGAACAACTTGAAGAAGCTATGTGTCAAGTTCAGGATACTGGTCTTTCTCATCTTGCTTTTGATACTGTTCATTATAATCCCTCTGATCTGTCTACTTGGCTTGAAAGTATGCTCACGGAGCTTCATCCGATGCCTAATTTTGCGACGCCGCCACCTCCTTCGCAGCTGGATGATTCTTCCTTTTTAGCTCCGGCGGAATCCTCCACCATCACTTCCATTGATTACGACCCTCAACGGCAAACTAGCAGCCGGATTTTCGAGGAATCTTCGAGTTCTGATTACGACCTTAAAGCTATCACGAGCAGTGCGATTTATTCACCGAGAGAGAATAAACGTTTGAAATCTTCCGAGTCGGACTCAGATGTGTTCTCTACCTCGGCGATTGGGGCTTCTGATTCTGTAACTCGTCCTGTCGTCCTCGTCGATTCGCAGGAGAACGGAATTCAACTGGTTCATGCGTTGATGGCTTGCGCCGAAGCCGTACAGCAGAACAATCTGAATATAGCGGAGGCTCTGGTGAAGAGAATCGGTTACTTGGCGGTTTCTCAAGCAGGAGCGATGAGGAAGGTCGCCACGTTCTTCGCTGAAGCGTTGGCACGCCGAATCTACAGGCTCTGCCCTGAGAATCCCCTTGATCATTCAGTGTCCGATAGGCTTCAGATGCATTTCTACGAGAGTTGTCCCTATCTGAAATTCGCGCATTTCACCGCGAATCAAGCGATTCTCGAAGCCTTCGAAGGGAAGAAACGTGTTCACGTAATCGATTTCTCCATGAACCGAGGGATGCAATGGCCAGCTCTGATTCAAGCCCTAGCTCTACGGCCGAACGGTCCTCCAGCCTTTCGTCTCACCGGAATTGGTCCTCCGGCGCCGGATAACTCAGATTACCTCCAAGAAGTAGGCTGGAAACTGGCTGAATTAGCCGAAGCTATCCATGTGGACTTCGAGTACAGAGGATTTGTGGCGAATAGTTTAGCAGATCTAGATGCGTCGATGCTGGAGCTCCGACCGAGCGAGGTTGAATCGGTGGTAGTGAACTCAGTATTCGAGTTACATAAGCTCCTGGCTCGGCCTGGCGCCCTTGAAAAGGTTCTGTCGGTGGTGAAGCAGATGAAGCCGGAGATCATGACGGTGGTGGAGCAAGAAGCGAATCACAACGGTCCGGTTTTCGTGGACCGGTTCACTGAGTCACTCCATTACTACTCAACGCTTTTTGACTCGTTGGAAGGCTCCCCCAACAACCAGGACAAAATCATGTCCGAAATGTACCTCGGAAAGCAAATTTGCAACGTCGTGGCTTGTGAAGGTGCCGACCGTGTCGAACGCCACGAGACCTTAACCCAGTGGCAAACTCGGTTATCCTCCGCAGGGTTCGAACCCATCCATCTCGGCTCAAACGCATTCAAACAAGCTAGCATGCTCCTCGCCCTATTCGGCAGTGGAGAAGGCTACCGTGTGGAAGAGAACAACGGATCACTAATGCTAGGATGGCACACTCGCCCCCTCATAGCCACCTCCGCTTGGAAACTCGGCAACAACTCGGTGGTCGCTCACTGA 1761 51.33 MKREHHHLHPRPEPPSMAAVPNGESFLNTGKAKLWEEEAQLDGGMDELLAVLGYKVKSSDMADVAQKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWLESMLTELHPMPNFATPPPPSQLDDSSFLAPAESSTITSIDYDPQRQTSSRIFEESSSSDYDLKAITSSAIYSPRENKRLKSSESDSDVFSTSAIGASDSVTRPVVLVDSQENGIQLVHALMACAEAVQQNNLNIAEALVKRIGYLAVSQAGAMRKVATFFAEALARRIYRLCPENPLDHSVSDRLQMHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNRGMQWPALIQALALRPNGPPAFRLTGIGPPAPDNSDYLQEVGWKLAELAEAIHVDFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKLLARPGALEKVLSVVKQMKPEIMTVVEQEANHNGPVFVDRFTESLHYYSTLFDSLEGSPNNQDKIMSEMYLGKQICNVVACEGADRVERHETLTQWQTRLSSAGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLMLGWHTRPLIATSAWKLGNNSVVAH 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19022258 19024452 + MELO3C005298.2.1 Cme09g01376 338236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01376 586 PANTHER DELLA PROTEIN GAI1-RELATED 20 578 IPR030006 GO:0003712|GO:0005634
Cme09g01376 586 Pfam Transcriptional regulator DELLA protein N terminal 46 113 IPR021914 -
Cme09g01376 586 MobiDBLite consensus disorder prediction 1 21 - -
Cme09g01376 586 Coils Coil 54 74 - -
Cme09g01376 586 ProSiteProfiles GRAS family profile. 209 577 IPR005202 -
Cme09g01376 586 SMART DELLA_2 46 119 - -
Cme09g01376 586 Pfam GRAS domain family 218 577 IPR005202 -
Cme09g01376 586 Gene3D - 44 109 IPR038088 -
Cme09g01376 586 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 578 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00942 Cme-Chr9:13183531 Cme09g01376 Cme-Chr9:19022258 0 dispersed
Cme09g01376 Cme-Chr9:19022258 Cme10g00052 Cme-Chr10:401939 2.47E-71 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41961 PF03514 GRAS 1.80E-135 CL0063 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01376 K14494 - csv:101204164 1129.78