Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme09g01378 | ATGGAACACTTCTTAGGTCTTCTCCGAATTCGGGTGCTGCGCGGTGTTAATCTCGCCATTCGTGATACCCGCAGCAGCGATCCCTATGTCGTCGTCACCATGGGCAATCAGCTTAAATTGGAGCAGAAGTTGAAGACTCGCGTGGTGAAAAATAATTGCAATCCTGAATGGAATGATGAGTTGACTCTTTCAGTTGCAGATCTCAGGACTCCGATTGGTATATCAGTATATGACAAAGACACACTAACAGACCATGACAAAATGGGAGATGCTGAGATCGACATCGAACCATACATCGAATGTTTGAAGATGGGATTACAGAGCCTCCCAGATGGTTGTGTGGTTAGGAGATTATATCCAAGCGGAACAAACTATTTAGCTGATGAAAGCCAATGTGTTTGGCACAATGGGAAAATTGTACAGAACATGATCTTGAGGTTGAAGAACGTAGAGTGTGGTGAGGTGGCAATTCAGCTCGAATGGATCGACGTTCCTGGTGCTAAGGGTTTGCCAGTTGGAAGTACGAGTGACTTCTGA | 537 | 45.25 | MEHFLGLLRIRVLRGVNLAIRDTRSSDPYVVVTMGNQLKLEQKLKTRVVKNNCNPEWNDELTLSVADLRTPIGISVYDKDTLTDHDKMGDAEIDIEPYIECLKMGLQSLPDGCVVRRLYPSGTNYLADESQCVWHNGKIVQNMILRLKNVECGEVAIQLEWIDVPGAKGLPVGSTSDF | 178 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 19034438 | 19036845 | - | MELO3C005299.2.1 | Cme09g01378 | 338238 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme09g01378 | 178 | ProSiteProfiles | C2 domain profile. | 1 | 111 | IPR000008 | - | |
| Cme09g01378 | 178 | CDD | C2_ArfGAP | 5 | 153 | - | - | |
| Cme09g01378 | 178 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 168 | IPR044562 | - | |
| Cme09g01378 | 178 | Pfam | C2 domain | 6 | 97 | IPR000008 | - | |
| Cme09g01378 | 178 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 10 | 1 | 168 | - | - | |
| Cme09g01378 | 178 | Gene3D | C2 domain | 4 | 169 | IPR035892 | - | |
| Cme09g01378 | 178 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 163 | IPR035892 | - | |
| Cme09g01378 | 178 | SMART | C2_3c | 7 | 107 | IPR000008 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme06g01517 | Cme-Chr6:14634544 | Cme09g01378 | Cme-Chr9:19034438 | 6.68E-70 | dispersed | |
| Cme09g01378 | Cme-Chr9:19034438 | Cme10g01584 | Cme-Chr10:20916516 | 5.37E-74 | dispersed | |
| Cme09g01378 | Cme-Chr9:19034438 | Cme12g01829 | Cme-Chr12:24675963 | 3.27E-72 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme09g01378 | - | - | csv:101204404 | 315.464 |